Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1166
         (755 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    29   3.6  
AC024090-8|AAF35422.2|  649|Caenorhabditis elegans Hypothetical ...    28   6.2  
Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
           protein Y8A9A.2 protein.
          Length = 1360

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 23/81 (28%), Positives = 34/81 (41%)
 Frame = +2

Query: 14  TTASSPATTTVLSVRAWNMRAKARAPXXXXXXXXXXXXXDGTPWSTATSCGSATDRKLLE 193
           TTA+S   +T  S  +    +   +              + T  ST  S  ++TD    E
Sbjct: 193 TTATSTTESTSTSTDSTTTESTTESTTESTSTSTDSTTTESTTESTTESTSTSTDSTTTE 252

Query: 194 STSH*TLDSSWPETMSRSFTE 256
           STS  T DS+  E+ + S TE
Sbjct: 253 STSTST-DSTTTESTTESTTE 272


>AC024090-8|AAF35422.2|  649|Caenorhabditis elegans Hypothetical
           protein C52E2.8 protein.
          Length = 649

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -3

Query: 267 RGCSSVNDLDIVSGHDESKV*WEVLSNNFLSVADP 163
           R  S ++ L I SG+   KV W++L +NFLS A P
Sbjct: 288 RAQSLLSGLQITSGN--YKVAWKILDHNFLSNARP 320


>Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical
           protein C29E6.1a protein.
          Length = 812

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 572 STMPWSSVRS*TPRETARPLDTMVKSPVFLTST 670
           ST   ++  + TP+ + +P  T  KSPV +T+T
Sbjct: 388 STKKLTTTTTTTPKPSQKPTTTTTKSPVVITTT 420


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,809,936
Number of Sequences: 27780
Number of extensions: 353193
Number of successful extensions: 1119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)