Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1165
(331 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ... 29 0.18
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 28 0.32
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa... 27 0.97
SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce... 25 2.2
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 25 2.2
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 25 3.0
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ... 25 3.0
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ... 25 3.9
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 24 5.2
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 24 6.8
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch... 24 6.8
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 23 9.0
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 23 9.0
SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3... 23 9.0
>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 441
Score = 29.1 bits (62), Expect = 0.18
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -3
Query: 224 HRRHWENIVVTGKTSSYWENIVVLGKHRRTGKTSSYWEN 108
HR HW+ ++ K +Y E I L ++T K W N
Sbjct: 279 HRDHWDQLLKPWKCMTYSEAIEELSAVKKTWKYPPKWGN 317
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 28.3 bits (60), Expect = 0.32
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = +3
Query: 21 VRRCFPSDDDVFPVRRCFPSTTMFSQYDD-----VFPVRRCFPSTTMFSQYDDVFPV 176
V R PSDD F +CF ++ F + V+ V +C ST + D+ PV
Sbjct: 103 VCRQIPSDDMAFKFTKCFQNSQQFRDANFCKLVLVWTVCQCVSSTVYYPAILDLLPV 159
>SPCC553.09c |spb70|pol12|DNA polymerase alpha
B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 0.97
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 142 RCFPSTTMFSQYDXVFPVTT 201
+CFP+ MFS D VF V+T
Sbjct: 418 KCFPNPCMFSINDVVFGVST 437
Score = 23.8 bits (49), Expect = 6.8
Identities = 20/80 (25%), Positives = 33/80 (41%)
Frame = +3
Query: 66 RCFPSTTMFSQYDDVFPVRRCFPSTTMFSQYDDVFPVRRXFPSHDDVFPVTTMFSQSRRC 245
+CFP+ MFS D VF V + + +++F PSH ++F +R
Sbjct: 418 KCFPNPCMFSINDVVFGVST--NDILLHTSREELF----RLPSHGNLFARLVSHVLHQRH 471
Query: 246 FPSTTMFSQ*RRCFPIDEDV 305
F +C P + D+
Sbjct: 472 FYPLFPGGSLEKCNPSNLDI 491
Score = 23.4 bits (48), Expect = 9.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 47 RCFPSTTMFSQYDDVFPV 100
+CFP+ MFS D VF V
Sbjct: 418 KCFPNPCMFSINDVVFGV 435
>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 388
Score = 25.4 bits (53), Expect = 2.2
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = -3
Query: 176 YWENIVVLGKHRRTGKTSSYWENIVVLGKHRRTGKTSSYWENIVVTGKTSS 24
Y + LGK TS Y I GK TGK +++ + +V KT S
Sbjct: 207 YGSPYIELGKKSYIISTSGYLTTIEYSGKGYFTGKKNTF-KATIVNAKTKS 256
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.4 bits (53), Expect = 2.2
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -2
Query: 165 HRRTGKTSSYWENIVVLGKHRRTG--KTSSYWENIVVLG 55
HR + +T S E I + K+ + + WENI+VLG
Sbjct: 367 HRPSNETVSLPEAIYITIKNYAANYKRRNDLWENIIVLG 405
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 25.0 bits (52), Expect = 3.0
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = -1
Query: 301 SSSMGKH--RRYWENIVVLGKHRRDWENIVVTGKTSS*LGKXRRTGKTSSYWENIVVLGK 128
S+++ KH R +++ + H ++ VT TSS L R++ T S W ++ +
Sbjct: 656 SATVEKHIWERKENDLIKISNHSTEYGKDFVTFPTSSLLRFYRKSMATESNWTILMFMIT 715
Query: 127 H 125
H
Sbjct: 716 H 716
>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 937
Score = 25.0 bits (52), Expect = 3.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 244 HRRDWENIVVTGKTSS*LGKXRRT 173
HRRD +VVTG T + G+ + T
Sbjct: 359 HRRDGHYVVVTGITPTPFGEGKST 382
>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 409
Score = 24.6 bits (51), Expect = 3.9
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 224 HRRHWENIVVTGKTSSYWE 168
HR WE + VT T YW+
Sbjct: 141 HRTLWEKLGVTVDTYPYWD 159
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 24.2 bits (50), Expect = 5.2
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3
Query: 186 FPSHDDVFPVTTM 224
+PSHDD+F VT +
Sbjct: 1434 YPSHDDLFDVTQL 1446
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 23.8 bits (49), Expect = 6.8
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -2
Query: 306 KHPRQWENIVVTGKTSSYWENIVVTGKTSSSLGKHRRD 193
KHP +W + T +S+++EN+ SL + D
Sbjct: 856 KHPSEWGVLQHTFISSNFFENVPCYISLEQSLQNFQND 893
>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 23.8 bits (49), Expect = 6.8
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = -2
Query: 267 KTSSYWENIVVTGKTSSSLGKHRRD--WENXVVLGKHRRTGKTSSYW 133
K ++ W N+ V + + +LG HR W +GK K +W
Sbjct: 295 KPNAVWLNVGVVVRVAQTLGLHRNSAMWS----IGKEDAEEKARLFW 337
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 23.4 bits (48), Expect = 9.0
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +3
Query: 18 PVRRCFPSDDDVF-PVRRCFPSTTMFSQYDDVFPVRRCFPSTTMFSQ 155
PVR FPSDD F + C S+ + Q D+ R + ++ Q
Sbjct: 1178 PVRNKFPSDDPAFILLYECLRSSNV--QIDESLEYRFVLHNANVYCQ 1222
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 23.4 bits (48), Expect = 9.0
Identities = 11/42 (26%), Positives = 17/42 (40%)
Frame = +1
Query: 82 RRCFPSTTMFSQYDDVFPVRRCFPSTTMFSQYDXVFPVTTMF 207
+ C P T F + VR+ + S + PVTT +
Sbjct: 1056 KSCLPLLTAFKDNGEAGIVRKVVQQKSFSSSASKMIPVTTKY 1097
>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 23.4 bits (48), Expect = 9.0
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +1
Query: 13 FSQYDDVFPVTTMFSQYDDVFPVRRCFPSTTMFSQYDDVFPVRRCFP 153
+SQ+ FP FS D PVR + D+F V + +P
Sbjct: 24 YSQFKAFFPGNWKFSNSKDKKPVRSPTLDEPVGDVDIDIFDVSKFYP 70
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,771,591
Number of Sequences: 5004
Number of extensions: 39708
Number of successful extensions: 115
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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