Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1165
(331 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0712 - 27057858-27057941,27058093-27058182,27058268-270583... 31 0.29
01_06_1029 - 33923733-33924679,33925448-33925459,33925770-33925848 31 0.29
03_02_0757 - 10940993-10941112,10941218-10941418,10941661-109417... 30 0.51
08_01_0704 + 6219530-6219609,6221595-6222243,6222339-6222437,622... 28 2.0
03_06_0337 + 33224333-33224479,33224603-33224663,33224740-332247... 28 2.0
02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,290... 28 2.0
03_06_0507 + 34404843-34404968,34405091-34405151,34405260-344052... 27 2.7
10_01_0201 + 2175660-2176892 27 3.6
03_04_0088 + 17209568-17209876,17209966-17210595,17210846-172110... 27 3.6
07_01_0917 + 7735696-7735896,7735907-7736404,7736481-7736813,773... 27 4.7
04_04_1545 - 34278266-34278586,34278685-34279114,34279225-342793... 26 6.2
03_03_0035 + 13977150-13979228,13979351-13979824 26 6.2
02_05_0011 + 24953472-24954506 26 6.2
01_05_0008 - 17063377-17063813,17064937-17065052,17065284-170657... 26 6.2
07_03_1651 - 28395369-28395436,28395524-28395575,28395857-283960... 26 8.3
03_06_0458 - 34077649-34077849,34077956-34078127,34078803-34079290 26 8.3
03_04_0004 + 16234648-16234731,16235178-16235237,16235598-162356... 26 8.3
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 26 8.3
02_04_0258 + 21339682-21339806,21340635-21340730,21340905-213409... 26 8.3
>03_05_0712 -
27057858-27057941,27058093-27058182,27058268-27058384,
27059759-27059866,27060314-27060406,27060499-27060669,
27061505-27061757,27061860-27062138,27062939-27063273,
27063364-27064332,27064711-27065182,27065243-27065291,
27066564-27066804,27067606-27067695,27068172-27068294,
27068365-27068418
Length = 1175
Score = 30.7 bits (66), Expect = 0.29
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -3
Query: 149 KHRRTGKTSSYWENIVVLGKHRRTGKTSSYWENIV--VTGKTS 27
KH R TSS E++ + + R TS+ W N+ +TGK++
Sbjct: 557 KHERESATSSSGEHVSSMRQRRNFKDTSNKWSNVFQKITGKSN 599
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 168 KHRRTGKTSSYWENIVVLGKHRRTGKTSSYWENI 67
KH R TSS E++ + + R TS+ W N+
Sbjct: 557 KHERESATSSSGEHVSSMRQRRNFKDTSNKWSNV 590
>01_06_1029 - 33923733-33924679,33925448-33925459,33925770-33925848
Length = 345
Score = 30.7 bits (66), Expect = 0.29
Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Frame = -2
Query: 300 PRQWENIVVTGKT--SSYWENIVVTGKTSSSLGK-HRRDWENXVVLGKHRRTGKTSSYWE 130
P W++ + T K ++ W + G+TS++ G+ + +W N V ++S W+
Sbjct: 140 PDGWDSFIFTNKPVPATGWGD----GETSNTPGQQYPTNWNNHVKQPTEANCMQSSVNWD 195
Query: 129 NIVVLGKHRRTGKTSSYWENIVVLGKHRRHWE 34
N V ++S W+ V +WE
Sbjct: 196 NYVSQPPQATVQQSSGNWDMYVKQQDQANNWE 227
>03_02_0757 -
10940993-10941112,10941218-10941418,10941661-10941795,
10941948-10942088,10942214-10942405,10942624-10942748,
10942828-10942903,10943024-10943173,10943467-10943856,
10944078-10944227,10944430-10944710,10945034-10945230,
10945836-10946035,10946422-10946469,10946566-10946688,
10946771-10946882,10946988-10947103,10947526-10947660
Length = 963
Score = 29.9 bits (64), Expect = 0.51
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -3
Query: 188 KTSSYWENIVVLGKHRRTGKTSSYWE-NIVVLGKHRRTGKTSSYWENIVVTGKTSSYWEN 12
K S+Y+ +V R TSS E NIV+L + ++ S++W + T T +E
Sbjct: 560 KNSAYFSKLVFSFTDRYAALTSSAEEANIVMLTEDQKNQLLSAFWVQAIQTDNTPFNYEA 619
Query: 11 I 9
I
Sbjct: 620 I 620
>08_01_0704 + 6219530-6219609,6221595-6222243,6222339-6222437,
6222521-6222616,6222750-6222848,6222929-6223027,
6223811-6223882,6224508-6224597,6225173-6227329
Length = 1146
Score = 27.9 bits (59), Expect = 2.0
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +3
Query: 159 DDVFPVRRXFPSHDDVFPVTTMFSQSRRCFPSTTMFSQ*RRCFPIDEDVFP 311
DD V + FP HD P + +S S CF S+ F R +D P
Sbjct: 1081 DDTSAVEQYFPQHDLNKPPSPDYSASPSCFSSS--FDNTRNFTQVDHASLP 1129
>03_06_0337 +
33224333-33224479,33224603-33224663,33224740-33224776,
33225237-33225367,33225447-33225590,33225686-33225776,
33225973-33226106,33226234-33226373,33227328-33227426,
33227520-33227602,33227690-33227744,33227826-33227937,
33228274-33228766,33228881-33229094,33229203-33229273,
33229733-33229901,33229991-33230120,33230556-33230968,
33231059-33231262
Length = 975
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 17 PSTTMFSQ*RRCFPSTTMFSQYDDVFPVRRCF 112
PST S F S+ + + + +V PVRRCF
Sbjct: 33 PSTVFVSNLPYTFKSSDLEAVFSEVGPVRRCF 64
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 110 FPSTTMFSQYDDVFPVRRCFPSTTXFSQSRRCF 208
F S+ + + + +V PVRRCF S++ R F
Sbjct: 45 FKSSDLEAVFSEVGPVRRCFMVAPKGSETSRGF 77
>02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,
2907650-2907790,2907870-2908043,2908577-2908851,
2909592-2909755,2910409-2910536,2910628-2910734,
2911747-2911880,2912266-2912441,2912530-2914257,
2915084-2915239,2915328-2915486,2915581-2915751,
2915931-2916047,2916417-2916473,2916565-2916680,
2916790-2916916,2917862-2917945
Length = 2056
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/69 (21%), Positives = 25/69 (36%)
Frame = -3
Query: 227 KHRRHWENIVVTGKTSSYWENIVVLGKHRRTGKTSSYWENIVVLGKHRRTGKTSSYWENI 48
K + W N+ + S++ V G K S W+ G T K W N+
Sbjct: 1728 KDKESWGNVPASPSDSAWNAAPVSQGNESSDAKQSDSWDGWKSAGVDASTNKDKESWGNV 1787
Query: 47 VVTGKTSSY 21
+ S++
Sbjct: 1788 PASPSDSAW 1796
Score = 27.1 bits (57), Expect = 3.6
Identities = 15/61 (24%), Positives = 21/61 (34%)
Frame = -2
Query: 306 KHPRQWENIVVTGKTSSYWENIVVTGKTSSSLGKHRRDWENXVVLGKHRRTGKTSSYWEN 127
K W N+ + S+ W V+ SS K W+ G T K W N
Sbjct: 1728 KDKESWGNVPASPSDSA-WNAAPVSQGNESSDAKQSDSWDGWKSAGVDASTNKDKESWGN 1786
Query: 126 I 124
+
Sbjct: 1787 V 1787
>03_06_0507 +
34404843-34404968,34405091-34405151,34405260-34405296,
34405365-34405386,34405861-34405957,34406037-34406180,
34407034-34407173,34408205-34408255,34408347-34408429,
34408515-34408590,34408646-34408760,34409080-34409575,
34409682-34409895,34410000-34410070,34410527-34410695,
34410787-34410916,34411330-34411742,34411839-34412039
Length = 881
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 17 PSTTMFSQ*RRCFPSTTMFSQYDDVFPVRRCF 112
PST S F S + + + +V PVRRCF
Sbjct: 26 PSTVFVSNLPYTFKSADLEAVFSEVGPVRRCF 57
>10_01_0201 + 2175660-2176892
Length = 410
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = +3
Query: 33 FPSDDDVFPVRRCFPSTTMFSQYDDVFPVRRCFPSTTMFS 152
F D + F + R ST Y F + RCFP FS
Sbjct: 369 FTLDINTFKLERLCASTPQGISYHPQFELYRCFPPPLSFS 408
>03_04_0088 +
17209568-17209876,17209966-17210595,17210846-17211019,
17211434-17211515,17212091-17212278,17212993-17213152,
17213441-17213763,17213860-17213967,17214116-17214189,
17214249-17214361,17214461-17214741
Length = 813
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 278 SLLGKHRRTGKTSS*LGKHRRHWENI 201
S++G H+ G S +G ++ HWE I
Sbjct: 405 SMMGAHKAPGPDSFTVGFYQAHWETI 430
>07_01_0917 +
7735696-7735896,7735907-7736404,7736481-7736813,
7736991-7737314,7737367-7737836,7738165-7738447,
7738527-7738640
Length = 740
Score = 26.6 bits (56), Expect = 4.7
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = -1
Query: 193 LGKXRRTGKTSSYWENIVVLGKHRRTGKTSSYWENIVVLGKHRRTGKTSSSLGKHRRTGK 14
L K +R G +S + + + +GK S+ W + + + R + TSS+ G
Sbjct: 67 LKKKKRPGGSSRKASDTLQRPRQGSSGKLSARWRIVGKISRQRWSRSTSSTPPSQNHLGN 126
Query: 13 TSS 5
T S
Sbjct: 127 THS 129
>04_04_1545 -
34278266-34278586,34278685-34279114,34279225-34279322,
34279415-34279517,34279609-34279694,34279778-34279865,
34279950-34280063,34280147-34280235,34280369-34280484,
34280906-34280951
Length = 496
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -3
Query: 209 ENIVVTGKTSSYWENIVVLGKHRRTGKTSSYWENIVVLGKHRRTG 75
EN + S +W N+ VLG+ T Y+ N+ H+ TG
Sbjct: 309 ENKIALRFNSVFWPNVEVLGRVAPTSNACGYFLNL-----HKATG 348
>03_03_0035 + 13977150-13979228,13979351-13979824
Length = 850
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -2
Query: 243 IVVTGKTSSSLGKHRRDWENXVVLGKHRRTGKTSSYWENIVVL 115
+ V K +S LGK W V+LG T+ +W V+L
Sbjct: 89 LAVLEKAASGLGKLDFVWATVVLLGGFASALSTTDFWCVTVIL 131
>02_05_0011 + 24953472-24954506
Length = 344
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -2
Query: 237 VTGKTSSSLGKHRRDWENXVVLGKHR 160
+TGKT+S G+ +RD+E +G+ R
Sbjct: 7 ITGKTTSMSGELKRDYEIGEEIGRGR 32
>01_05_0008 -
17063377-17063813,17064937-17065052,17065284-17065728,
17066421-17066760
Length = 445
Score = 26.2 bits (55), Expect = 6.2
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Frame = -3
Query: 248 KTSS*LGKHRRHWENIVVTGKTSSYWENIVVLGKHRRTGKTSSYWENIVVLGKHRRTGKT 69
K +S +G +E+ TG Y + +H R G S +W++ + R +
Sbjct: 264 KQASIVGFRHIIFEDNYDTGTGDHYSLRQICDQEHIRGGGHSCFWDS----DEARLRSRR 319
Query: 68 SSYWENIVVT----GKTSSYW 18
S+WE V T GK ++W
Sbjct: 320 KSFWEKAVETDELCGKDDAWW 340
>07_03_1651 -
28395369-28395436,28395524-28395575,28395857-28396092,
28396362-28396419,28396509-28396577,28396686-28396791,
28397104-28397171,28397266-28397385,28398144-28398231,
28399433-28399534,28399699-28399757,28399866-28400003,
28400222-28400473,28400508-28400593,28401061-28401165,
28402351-28402516
Length = 590
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = -3
Query: 206 NIVVTGKTSSYWENIVVLGKHRRTGKTSSYWEN--IVVLGKHRRTGKTSSYWENIVV 42
N++++ YWE + + + R +WE+ LG TG + +E I++
Sbjct: 263 NMLLSYSCPEYWEKRIQMERVERVRLAKEHWESQCRAFLGIFLETGPKARMFEEILI 319
>03_06_0458 - 34077649-34077849,34077956-34078127,34078803-34079290
Length = 286
Score = 25.8 bits (54), Expect = 8.3
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = -3
Query: 311 WENILVNGKTSSLLGKHRRTGKT--SS*LGKHRRHWENIVVTGKTSSYW 171
W +LV + L +HR +T ++ + KH HW N V S W
Sbjct: 230 WSPLLVESNSDHPL-RHRVADRTVRAASINKHAAHWTNADVLVFNSYLW 277
>03_04_0004 +
16234648-16234731,16235178-16235237,16235598-16235627,
16235859-16235909,16235978-16236076,16236410-16236469,
16236534-16236623,16237011-16237112,16237195-16237305,
16237952-16238068,16238153-16238233,16239089-16239169,
16239798-16239875,16239949-16240088,16240205-16240304,
16240836-16240954,16241152-16241287,16241371-16241501,
16242222-16242298,16242451-16242562,16242638-16242693,
16243724-16243839,16245538-16245622,16245703-16245806,
16246469-16246597,16246888-16246938
Length = 799
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = -1
Query: 91 NIVVLGKHRRTGKTSSSLGKHRRTG 17
N ++LGKHR+ + ++++ K RR+G
Sbjct: 257 NGLILGKHRQPQRFANAMRKLRRSG 281
>03_02_0740 - 10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 25.8 bits (54), Expect = 8.3
Identities = 16/53 (30%), Positives = 22/53 (41%)
Frame = -3
Query: 212 WENIVVTGKTSSYWENIVVLGKHRRTGKTSSYWENIVVLGKHRRTGKTSSYWE 54
W N + G S+WE V K + S WE V+ K+ + S WE
Sbjct: 1173 WRNELEEG--GSWWEGRVSAVKPKSLDFPESPWEKYVIQYKNDGSDHPHSPWE 1223
>02_04_0258 +
21339682-21339806,21340635-21340730,21340905-21340980,
21341085-21341143,21341280-21341380,21341447-21341773,
21341861-21342021,21342100-21342303,21342735-21342966,
21343629-21344239
Length = 663
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -2
Query: 306 KHPRQWENIVVTGKTSSYWENIVVTGKTSSSLGKH 202
K ++ +I+ +G ++ WE++V KT GKH
Sbjct: 308 KDQQRLRSILGSGMSNKMWESLVEHAKTCVLSGKH 342
Score = 25.8 bits (54), Expect = 8.3
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -3
Query: 329 GKHSRQWENILVNGKTSSLLGKH 261
G ++ WE+++ + KT L GKH
Sbjct: 320 GMSNKMWESLVEHAKTCVLSGKH 342
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,199,357
Number of Sequences: 37544
Number of extensions: 249959
Number of successful extensions: 726
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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