Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1165
         (331 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC096272-1|AAH96272.1|  560|Homo sapiens HIV-1 Rev binding prote...    31   0.86 
AB046802-1|BAB13408.2| 1740|Homo sapiens KIAA1582 protein protein.     31   0.86 
AK126616-1|BAC86614.1|  309|Homo sapiens protein ( Homo sapiens ...    30   2.0  
AF267859-1|AAG44728.1|  217|Homo sapiens GL013 protein.                29   4.6  
AK094170-1|BAC04299.1|  400|Homo sapiens protein ( Homo sapiens ...    28   6.0  

>BC096272-1|AAH96272.1|  560|Homo sapiens HIV-1 Rev binding protein
           protein.
          Length = 560

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 17/53 (32%), Positives = 21/53 (39%)
 Frame = +2

Query: 95  PVRRCFPSTTMFSQYDDVFPVRRCFPSTTXFSQSRRCFPSDDDVFPVTTMFSQ 253
           P     P++   S     FP +  FP  T FSQ    F +     PV T F Q
Sbjct: 477 PAPYSLPTSFSGSFQQPAFPAQAAFPQQTAFSQQPNGFAAFGQTKPVVTPFGQ 529


>AB046802-1|BAB13408.2| 1740|Homo sapiens KIAA1582 protein protein.
          Length = 1740

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
 Frame = -2

Query: 309 GKHPRQWENIVVTGKTSSYWENIVVTGK--TSSSLGKHRRDWENXVVLGKHRRTGKT 145
           GK P Q  N  + GK S+ WE+  VT +  T    G+H   W      G     G +
Sbjct: 394 GKPPNQHSNSDINGKGSTGWESPSVTSQNPTVQPGGEHMNSWAKAASSGTTASEGSS 450


>AK126616-1|BAC86614.1|  309|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44654 fis, clone BRACE2047232. ).
          Length = 309

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
 Frame = +3

Query: 3   YDDVFPVRRCFPSDDDVFP----VRRCFPSTTMFSQYDDVFPVRRCFPSTTMFSQYDDVF 170
           +  V  + RC PS   VFP    + RC PS  + S +  V  +  C PS    S +  V 
Sbjct: 85  FSSVLGMLRCGPSSPSVFPSVLRMLRCGPS--LPSVFSSVLGMLSCGPSIP--SVFSSVL 140

Query: 171 PVRRXFPSHDDVFPVTTMFSQSRRCFPS 254
            + R  PS   VF   +   +  RC PS
Sbjct: 141 RMLRCGPSIPSVF---SSVLRMLRCGPS 165


>AF267859-1|AAG44728.1|  217|Homo sapiens GL013 protein.
          Length = 217

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -2

Query: 294 QWENIVVTGKTSSYWE-NIVVTGKTSSSLGKHRRDWENXVVLGKHRRTGKTSSY 136
           +W+ ++  G +  YWE  + V G  SSS GK    WE+     +H  TGK  ++
Sbjct: 164 KWDTVLGNG-SPQYWEMGVTVLGNGSSSTGK----WEHSTGKWEH-STGKPQTW 211


>AK094170-1|BAC04299.1|  400|Homo sapiens protein ( Homo sapiens
           cDNA FLJ36851 fis, clone ASTRO2014363. ).
          Length = 400

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 21/64 (32%), Positives = 32/64 (50%)
 Frame = -2

Query: 291 WENIVVTGKTSSYWENIVVTGKTSSSLGKHRRDWENXVVLGKHRRTGKTSSYWENIVVLG 112
           W++  + GK     + I +  KTS S+ K  +D E  V+ G+H R G  S+     V+L 
Sbjct: 96  WKSRHIVGKRGDTRKKIEMETKTSISIPKPGQDGE-IVITGQH-RNGVISARTRIDVLLD 153

Query: 111 KHRR 100
             RR
Sbjct: 154 TFRR 157


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,652,226
Number of Sequences: 237096
Number of extensions: 1250040
Number of successful extensions: 2875
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2713
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1743854340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)