Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1165
(331 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57400.1 68416.m06390 expressed protein 31 0.19
At2g15420.1 68415.m01764 myosin heavy chain-related 29 0.75
At1g55270.1 68414.m06314 kelch repeat-containing F-box family pr... 28 1.7
At3g23860.1 68416.m02999 GTP-binding protein-related low similar... 27 3.0
At5g45140.1 68418.m05542 DNA-directed RNA polymerase, putative s... 27 4.0
At5g11430.1 68418.m01335 transcription elongation factor-related... 27 4.0
At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR... 27 4.0
At5g66790.1 68418.m08420 protein kinase family protein contains ... 26 5.3
At5g12290.1 68418.m01445 expressed protein similarity to NCA2 pr... 26 5.3
At4g31900.1 68417.m04533 chromatin remodeling factor, putative s... 26 7.0
At3g16010.1 68416.m02025 pentatricopeptide (PPR) repeat-containi... 26 7.0
At2g45620.1 68415.m05672 nucleotidyltransferase family protein l... 26 7.0
At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-2 fac... 26 7.0
At1g69870.1 68414.m08041 proton-dependent oligopeptide transport... 26 7.0
At1g64960.1 68414.m07363 expressed protein 26 7.0
At4g00755.2 68417.m00105 F-box family protein ; similar to SKP1... 25 9.3
At4g00755.1 68417.m00104 F-box family protein ; similar to SKP1... 25 9.3
At1g79700.1 68414.m09295 ovule development protein, putative sim... 25 9.3
At1g45150.1 68414.m05176 expressed protein 25 9.3
>At3g57400.1 68416.m06390 expressed protein
Length = 474
Score = 31.1 bits (67), Expect = 0.19
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = -1
Query: 259 VVLGKHRRDWENIV-VTGKTSS*LGKXRRTGKTSSYWENIVVLGKHRRTGKTSSYWENIV 83
++LG+ RR++++++ V KTS LG + S E+++ KH + K SS +
Sbjct: 293 MLLGRVRRNFKHVMLVDAKTSLFLGDPLTRIRNRSL-ESVLFFSKHSSSSKKSSEVNPAI 351
Query: 82 VLGKHRRTGKTSSSL 38
++G + + SSS+
Sbjct: 352 LIGGAKGIRRLSSSM 366
>At2g15420.1 68415.m01764 myosin heavy chain-related
Length = 957
Score = 29.1 bits (62), Expect = 0.75
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = -3
Query: 173 WENIVVLGKHRRTGKTSSYWENIVVLGKHRRTGKTSSYWENIVVTGKTSSYWENIV 6
++N+VV G R TG + V + RRTG S+ +V G +SY+E +V
Sbjct: 330 FDNLVVSG--RDTGARGAVGTRPVSRIEERRTGDCSAVRGRQIVLGLRASYFERVV 383
>At1g55270.1 68414.m06314 kelch repeat-containing F-box family
protein similar to SKP1 interacting partner 4
[Arabidopsis thaliana] GI:10716953; contains Pfam
profiles PF01344: Kelch motif, PF00646: F-box domain
Length = 434
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 303 HPRQWENIVVTGKTSSYWENI 241
+PR WENI V G++ S NI
Sbjct: 393 NPRLWENIAVKGQSKSILSNI 413
>At3g23860.1 68416.m02999 GTP-binding protein-related low similarity
to SP|Q99ME9 Nucleolar GTP-binding protein 1 (Chronic
renal failure gene protein) {Mus musculus}
Length = 230
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +2
Query: 158 RRCFPSTTXFSQSRRCFPSDDDVFPVTTMFSQYDDVFP 271
+ C P+ Q R S +D T++ ++Y DV P
Sbjct: 149 KSCIPALNLLDQVREFMASVEDDAAATSLVNKYSDVLP 186
>At5g45140.1 68418.m05542 DNA-directed RNA polymerase, putative
similar to SP|P22276 DNA-directed RNA polymerase III 130
kDa polypeptide (EC 2.7.7.6) (RNA polymerase III subunit
2) {Saccharomyces cerevisiae}; contains Pfam profiles
PF04560: RNA polymerase Rpb2 domain 7, PF04561: RNA
polymerase Rpb2 domain 2, PF04565: RNA polymerase Rpb2
domain 3, PF04566: RNA polymerase Rpb2 domain 4,
PF04567: RNA polymerase Rpb2 domain 5
Length = 1150
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 91 NIVVLGKHRRTGKTSSSLGKHRRTGKTSSY 2
N ++LGKH R ++SL + RR GK +
Sbjct: 553 NGLILGKHSRPQYFANSLRRLRRAGKIGEF 582
>At5g11430.1 68418.m01335 transcription elongation factor-related
contains weak similarity to transcription elongation
factors
Length = 871
Score = 26.6 bits (56), Expect = 4.0
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 25 DDVFPVTTMFSQYDDVFPVRRCFPSTTMFSQYDDV 129
+DV + SQYD+VFP R P T + DD+
Sbjct: 194 EDVIKFNVLKSQYDEVFP-RDNVPFTDIIFPNDDL 227
>At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 896
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +1
Query: 34 FPVTTMFSQYDDVFPVRRCFPSTTMFSQYDDVFPVR 141
FP+T++ S++ F V+ C P + + ++ + P+R
Sbjct: 662 FPMTSLPSEFHAEFLVKLCMPYSKLEKLWEGIQPLR 697
Score = 25.8 bits (54), Expect = 7.0
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +2
Query: 53 FPSTTMFSQYDDVFPVRRCFPSTTMFSQYDDVFPVR 160
FP T++ S++ F V+ C P + + ++ + P+R
Sbjct: 662 FPMTSLPSEFHAEFLVKLCMPYSKLEKLWEGIQPLR 697
Score = 25.8 bits (54), Expect = 7.0
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +3
Query: 72 FPSTTMFSQYDDVFPVRRCFPSTTMFSQYDDVFPVR 179
FP T++ S++ F V+ C P + + ++ + P+R
Sbjct: 662 FPMTSLPSEFHAEFLVKLCMPYSKLEKLWEGIQPLR 697
>At5g66790.1 68418.m08420 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 622
Score = 26.2 bits (55), Expect = 5.3
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -2
Query: 279 VVTGKTSSYWENIVVTGKTSSSLGKHRRDW 190
VV G YW + + + S +LG+ + DW
Sbjct: 158 VVNGSGCKYWFSSISQSQVSVNLGRLKLDW 187
>At5g12290.1 68418.m01445 expressed protein similarity to NCA2
protein, yeast, PIR:S54389~Contains 'Homeobox' domain
signature and profile AA305-328
Length = 602
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 165 HRRTGKTSSYWENIVVLGKHRRTGKTSSYW 76
H+ K +SY V++GKHR+ + + YW
Sbjct: 275 HKNLEKLNSYLS--VMVGKHRKPRRMTLYW 302
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 146 HRRTGKTSSYWENIVVLGKHRRTGKTSSYW 57
H+ K +SY V++GKHR+ + + YW
Sbjct: 275 HKNLEKLNSYLS--VMVGKHRKPRRMTLYW 302
>At4g31900.1 68417.m04533 chromatin remodeling factor, putative
strong similarity to chromatin remodeling factor CHD3
(PICKLE) [Arabidopsis thaliana] GI:6478518; contains
Pfam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain
Length = 1202
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -3
Query: 215 HWENIVVTGKTSSYWENIVVLGKHRRTGKTSSYWEN 108
HW++++ E + LGK +R GK Y E+
Sbjct: 780 HWKDLLKDKYEVQQAEELSALGKRKRNGKQVMYAED 815
>At3g16010.1 68416.m02025 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 642
Score = 25.8 bits (54), Expect = 7.0
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +3
Query: 120 RRCFPSTTMFSQYDDVFPVRRXFPSHDDVFPVTTMFSQSRRCFPSTTMFS 269
R+C P++ S Y+ V + H+ V V T CFP T +S
Sbjct: 191 RKCKPTS---STYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYS 237
>At2g45620.1 68415.m05672 nucleotidyltransferase family protein low
similarity to SP|O13833| Caffeine-induced death protein
1 {Schizosaccharomyces pombe}; contains Pfam profiles
PF03828: PAP/25A associated domain, PF01909:
Nucleotidyltransferase domain
Length = 764
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 240 VVTGKTSSSLGKHRRDWENXVVLGKH 163
VV+ +T S LGK +DW V +H
Sbjct: 677 VVSVRTGSILGKREKDWTRRVGNDRH 702
>At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-2 factor
(GT2) identical to GT2 factor [Arabidopsis thaliana]
GI:416490, GI:2664202 (DNA binding factor GT-2 from
Arabidopsis)
Length = 575
Score = 25.8 bits (54), Expect = 7.0
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Frame = -1
Query: 154 WENI----VVLGKHRRTGKTSSYWENIVVLGKHRRTGKTSSSLGKHRR 23
WE I + LG R + K +EN+ K + G+T S GK R
Sbjct: 71 WEEISRKMMELGYKRSSKKCKEKFENVYKYHKRTKEGRTGKSEGKTYR 118
>At1g69870.1 68414.m08041 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 620
Score = 25.8 bits (54), Expect = 7.0
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -2
Query: 261 SSYWENIVVTGKTSSSLGKHRRDWENXVVLGKHRRTGKTSSYWENIVVLG 112
SSY + +VT S G R DW L K+ GK ++ I VLG
Sbjct: 533 SSYLSSFLVTVVHKFSGGHDRPDW-----LNKNLNAGKLDYFYYLIAVLG 577
>At1g64960.1 68414.m07363 expressed protein
Length = 1168
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 238 DDVFPVRRCFPSND-DVFPLTRMFSH*RLCFP 330
D V + CF +ND + T F+H +LCFP
Sbjct: 1022 DLVLALGPCFINNDSEESSYTSSFNHIKLCFP 1053
>At4g00755.2 68417.m00105 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 377
Score = 25.4 bits (53), Expect = 9.3
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -1
Query: 178 RTGKTSSY-WENIV-VLGKHRRTGKTSSYWENIVVLGKHRRT 59
R T +Y E+I+ L K R G+T SYW + G+H+ T
Sbjct: 115 RASSTDNYPVESILNTLEKRDRIGRTPSYWSS---TGQHKTT 153
>At4g00755.1 68417.m00104 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 377
Score = 25.4 bits (53), Expect = 9.3
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -1
Query: 178 RTGKTSSY-WENIV-VLGKHRRTGKTSSYWENIVVLGKHRRT 59
R T +Y E+I+ L K R G+T SYW + G+H+ T
Sbjct: 115 RASSTDNYPVESILNTLEKRDRIGRTPSYWSS---TGQHKTT 153
>At1g79700.1 68414.m09295 ovule development protein, putative
similar to ovule development protein AINTEGUMENTA
(GI:1209099) [Arabidopsis thaliana]
Length = 303
Score = 25.4 bits (53), Expect = 9.3
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +3
Query: 9 DVFPVRRCFPSDDDVFPVRRCFPSTTMFSQYDDVFPVRRCFPSTTMFSQYD 161
+V P RR FP DD+ C S + ++ D +F + + ++++D
Sbjct: 252 EVIPTRRSFP--DDIQTYFGCQDSGKLATEEDVIFDCFNSYINPGFYNEFD 300
>At1g45150.1 68414.m05176 expressed protein
Length = 643
Score = 25.4 bits (53), Expect = 9.3
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = -1
Query: 172 GKTSSYWENIVVLGKHRRTGKTSSYWENIVVLGKHRRTGKTSSSLGKHRR 23
G+TS W +I V TG+ +E +++ + G SS L KH +
Sbjct: 151 GETSVIWVSIDV-----PTGQPPGQYEGEIIISAMKTDGGGSSHLAKHEK 195
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,235,384
Number of Sequences: 28952
Number of extensions: 210614
Number of successful extensions: 692
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 380568784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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