Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1164
         (765 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5AH62 Cluster: Putative uncharacterized protein; n=1; ...    34   3.4  
UniRef50_A2FNU6 Cluster: Putative uncharacterized protein; n=1; ...    33   5.9  

>UniRef50_A5AH62 Cluster: Putative uncharacterized protein; n=1;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 347

 Score = 34.3 bits (75), Expect = 3.4
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +1

Query: 49  FRIFSTYLVQIQILVIPKIGDIVK*YIFLIKYML*IIYYDWARPKLQRY-YWACKLL 216
           F++   YL ++ IL  PK  + +  Y+ L  Y++ ++ +   R K QR+ Y+  K +
Sbjct: 263 FKVVKCYLTKLPILSNPKFDEXLHMYLALFDYIVSVVLFQHIRDKEQRFVYYVSKAM 319


>UniRef50_A2FNU6 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 227

 Score = 33.5 bits (73), Expect = 5.9
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -2

Query: 341 ILEDYIPRDHSFKHVFSLVCLMMLLNIFLHFGFR 240
           ++E+YI  DH+  HV SLVC  + LN FL    R
Sbjct: 55  LIEEYITDDHTGTHVRSLVCGYLKLNDFLAINTR 88


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 683,834,736
Number of Sequences: 1657284
Number of extensions: 13014783
Number of successful extensions: 22160
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22157
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 63792713725
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)