Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1164
         (765 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39760| Best HMM Match : rve (HMM E-Value=1.1e-29)                   29   5.4  
SB_10098| Best HMM Match : NADH5_C (HMM E-Value=0.94)                  28   9.5  
SB_32048| Best HMM Match : NADH5_C (HMM E-Value=3.8)                   28   9.5  

>SB_39760| Best HMM Match : rve (HMM E-Value=1.1e-29)
          Length = 634

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +2

Query: 146 CYELFTMIGHVLNYKDITGHVNYCFTEYFHHS*IRSVKKYLKASSS 283
           C E+     H+L  K I  +VN+C T +   S +  + K  K  +S
Sbjct: 580 CEEVLDSKPHLLTSKTIYKNVNFCVTRWLRRSSLFKLPKVRKVQNS 625


>SB_10098| Best HMM Match : NADH5_C (HMM E-Value=0.94)
          Length = 310

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +3

Query: 339 YKYKILLYVCMSLNC*TAG--PI*LIFFVCV 425
           Y  ++L +VC++ NC  A    + ++FFVC+
Sbjct: 21  YDLRVLFFVCLNYNCSRASVYDLRVLFFVCL 51



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +3

Query: 339 YKYKILLYVCMSLNC*TAG--PI*LIFFVCV 425
           Y  ++L +VC++ NC  A    + ++FFVC+
Sbjct: 41  YDLRVLFFVCLNYNCSRASVYDLRVLFFVCL 71


>SB_32048| Best HMM Match : NADH5_C (HMM E-Value=3.8)
          Length = 347

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +3

Query: 339 YKYKILLYVCMSLNC*TAG--PI*LIFFVCV 425
           Y  ++L +VC++ NC  A    + ++FFVC+
Sbjct: 21  YDLRVLFFVCLNYNCSRASVYDLRVLFFVCL 51



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +3

Query: 339 YKYKILLYVCMSLNC*TAG--PI*LIFFVCV 425
           Y  ++L +VC++ NC  A    + ++FFVC+
Sbjct: 41  YDLRVLFFVCLNYNCSRASVYDLRVLFFVCL 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,329,791
Number of Sequences: 59808
Number of extensions: 420496
Number of successful extensions: 696
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)