Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1164
         (765 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              25   0.58 
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              23   2.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.5  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   9.5  

>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 502 LNSLDTDCSAICQADLSI 449
           +N L T+CSAI  ADL++
Sbjct: 97  VNKLITECSAISDADLAV 114


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 502 LNSLDTDCSAICQADLSI 449
           +N L T+CSAI  AD+ +
Sbjct: 97  VNKLITECSAISDADIHL 114


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 696 FDKYCTSSFGKK*STNFGFVERCL 625
           F  YC   FG+K   N  ++ R L
Sbjct: 427 FHCYCPVRFGRKADPNGDYIRRYL 450


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 573 DRCCPVNAYTKSHSSR 526
           D+CCP    TKS  +R
Sbjct: 808 DQCCPGFTMTKSGKTR 823


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,626
Number of Sequences: 438
Number of extensions: 4281
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)