Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1164
         (765 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20250.2 68418.m02411 raffinose synthase family protein / see...    29   2.6  
At5g20250.1 68418.m02410 raffinose synthase family protein / see...    29   2.6  

>At5g20250.2 68418.m02411 raffinose synthase family protein / seed
           imbibition protein, putative (din10) similar to seed
           imbibition protein GB:AAA32975 GI:167100 from [Hordeum
           vulgare]; contains nonconsensus AT donor splice site at
           intron 1; contains Pfam profile PF05691: Raffinose
           synthase or seed imbibition protein Sip1; identical to
           cDNA seed imbibition protein (din10) partial cds
           GI:10834551
          Length = 749

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 605 HIGSVRQRHRSTKPKLVDYF 664
           H+ S RQRH    P +VDYF
Sbjct: 187 HLNSFRQRHEKKLPGIVDYF 206


>At5g20250.1 68418.m02410 raffinose synthase family protein / seed
           imbibition protein, putative (din10) similar to seed
           imbibition protein GB:AAA32975 GI:167100 from [Hordeum
           vulgare]; contains nonconsensus AT donor splice site at
           intron 1; contains Pfam profile PF05691: Raffinose
           synthase or seed imbibition protein Sip1; identical to
           cDNA seed imbibition protein (din10) partial cds
           GI:10834551
          Length = 844

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 605 HIGSVRQRHRSTKPKLVDYF 664
           H+ S RQRH    P +VDYF
Sbjct: 282 HLNSFRQRHEKKLPGIVDYF 301


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,909,827
Number of Sequences: 28952
Number of extensions: 291005
Number of successful extensions: 469
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)