Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1161
         (721 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   3.3  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   3.3  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.8  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.8  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.8  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.8  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.8  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   5.8  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    21   7.6  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 577 RIPWNSNAQAEKKTLPGPLG 636
           +IPW+ NA+A  K   G  G
Sbjct: 330 QIPWDKNAEALAKWANGQTG 349


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 299 HRPHPLPVQTRHAPVLRANPYS 364
           +R HPL + + H  +L  NP S
Sbjct: 332 NRCHPLSLSSDHQAMLHHNPMS 353


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 6/13 (46%), Positives = 13/13 (100%)
 Frame = -3

Query: 281 SCVMFVLASSILI 243
           +C+MF++ASS+++
Sbjct: 279 NCIMFMVASSVVL 291


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 6/13 (46%), Positives = 13/13 (100%)
 Frame = -3

Query: 281 SCVMFVLASSILI 243
           +C+MF++ASS+++
Sbjct: 279 NCIMFMVASSVVL 291


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 6/13 (46%), Positives = 13/13 (100%)
 Frame = -3

Query: 281 SCVMFVLASSILI 243
           +C+MF++ASS+++
Sbjct: 279 NCIMFMVASSVVL 291


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 6/13 (46%), Positives = 13/13 (100%)
 Frame = -3

Query: 281 SCVMFVLASSILI 243
           +C+MF++ASS+++
Sbjct: 279 NCIMFMVASSVVL 291


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 6/13 (46%), Positives = 13/13 (100%)
 Frame = -3

Query: 281 SCVMFVLASSILI 243
           +C+MF++ASS+++
Sbjct: 279 NCIMFMVASSVVL 291


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 623 PDLSAASSGHFGLPRRTLVFKDEGTIIEKKK 715
           P +S++     G      VFKDEG   ++K+
Sbjct: 2   PHVSSSGGDDLGSTDEVKVFKDEGDGEDEKR 32


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 225 LYIFNMTLAKIVLRFGLDPDPRSP 154
           L +  + LA +V  F  DP  R+P
Sbjct: 444 LLVSKVALASVVKDFVFDPTERTP 467


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,761
Number of Sequences: 336
Number of extensions: 3816
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)