Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1161
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    32   0.072
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    29   0.67 
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    27   3.6  
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   6.2  
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom...    25   8.2  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    25   8.2  

>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 32.3 bits (70), Expect = 0.072
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 315 SGCGRCRVWSMFVRNVRFSE*YFNIMRPQKLYIF 214
           +GCG+  VW  +VR V F E Y        LY++
Sbjct: 108 NGCGKSYVWPSYVRFVDFDERYTRFANKYSLYLY 141


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 132 ARKIRGRPENAGPDPVRNVRRFSRV 206
           AR I GRPEN G   ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1274

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +1

Query: 163  RVRIQSET*DDFRECHIKYIQFLRPHYIKILLAKTNITHE 282
            +V + S+  D  +E H+KY+Q    + +++ LAK +I  E
Sbjct: 1069 QVDLLSKLADQEKEKHLKYLQSSYKNSLEVQLAKLDIVKE 1108


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = +2

Query: 536 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 673
           MR +   E Y+  + G H   T  Q   LF D     + H  L RRT
Sbjct: 1   MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47


>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 233

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 278 TNIDQTRHRPHPLPVQTRHAPV 343
           +N+D  +  PHP P Q    PV
Sbjct: 100 SNLDSVKSLPHPWPFQKESRPV 121


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 390 FPYLHYSID*RLFTLETCCGYGYEPARHL 476
           +P+   S+D R+F LE+  GY  EP   L
Sbjct: 159 YPFDLDSLDKRIFKLESKIGYADEPLSEL 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,015,835
Number of Sequences: 5004
Number of extensions: 63823
Number of successful extensions: 173
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)