Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1161
         (721 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X79204-1|CAA55793.1|  816|Homo sapiens ataxin-1 protein.               31   5.5  
BC117125-1|AAI17126.1|  815|Homo sapiens ataxin 1 protein.             31   5.5  
AL009031-2|CAA15622.1|  815|Homo sapiens ataxin 1 protein.             31   5.5  

>X79204-1|CAA55793.1|  816|Homo sapiens ataxin-1 protein.
          Length = 816

 Score = 30.7 bits (66), Expect = 5.5
 Identities = 24/75 (32%), Positives = 38/75 (50%)
 Frame = +3

Query: 456 YEPARHLHVHPSPEFSRSQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSR 635
           YE +RH+ VHPSP    S+  SG R     + +PN  +   D +E++++  +E S  T  
Sbjct: 357 YE-SRHVVVHPSPSDYSSRDPSGVR--ASVMVLPNSNTPAAD-LEVQQATHREASPSTLN 412

Query: 636 RRLQATLGYPVEHSF 680
            +    LG P   S+
Sbjct: 413 DKSGLHLGKPGHRSY 427


>BC117125-1|AAI17126.1|  815|Homo sapiens ataxin 1 protein.
          Length = 815

 Score = 30.7 bits (66), Expect = 5.5
 Identities = 24/75 (32%), Positives = 38/75 (50%)
 Frame = +3

Query: 456 YEPARHLHVHPSPEFSRSQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSR 635
           YE +RH+ VHPSP    S+  SG R     + +PN  +   D +E++++  +E S  T  
Sbjct: 356 YE-SRHVVVHPSPSDYSSRDPSGVR--ASVMVLPNSNTPAAD-LEVQQATHREASPSTLN 411

Query: 636 RRLQATLGYPVEHSF 680
            +    LG P   S+
Sbjct: 412 DKSGLHLGKPGHRSY 426


>AL009031-2|CAA15622.1|  815|Homo sapiens ataxin 1 protein.
          Length = 815

 Score = 30.7 bits (66), Expect = 5.5
 Identities = 24/75 (32%), Positives = 38/75 (50%)
 Frame = +3

Query: 456 YEPARHLHVHPSPEFSRSQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSR 635
           YE +RH+ VHPSP    S+  SG R     + +PN  +   D +E++++  +E S  T  
Sbjct: 356 YE-SRHVVVHPSPSDYSSRDPSGVR--ASVMVLPNSNTPAAD-LEVQQATHREASPSTLN 411

Query: 636 RRLQATLGYPVEHSF 680
            +    LG P   S+
Sbjct: 412 DKSGLHLGKPGHRSY 426


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,442,271
Number of Sequences: 237096
Number of extensions: 2431604
Number of successful extensions: 10504
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10504
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8455186714
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)