Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1161
(721 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 23 2.9
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 23 2.9
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 23 2.9
AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 23 2.9
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 23 2.9
AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 23 3.8
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.1
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.1
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.1
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.1
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.1
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.1
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 22 5.1
AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein. 22 5.1
DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein. 22 6.7
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.7
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.7
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 22 6.7
AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein. 21 8.9
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 23.0 bits (47), Expect = 2.9
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = +3
Query: 81 RTESCRSRTKRNRHDLTARKIRGRPENAGPDPVRNVRRFSRVSY*IYTVFEAALY*NTTR 260
RT SC SR + +RH+ + D R ++ R ++ V E L T+R
Sbjct: 226 RTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEKHLRERTSR 285
Query: 261 *NEHYARTSTR 293
Y+R+ R
Sbjct: 286 --RRYSRSRER 294
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 23.0 bits (47), Expect = 2.9
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = +3
Query: 81 RTESCRSRTKRNRHDLTARKIRGRPENAGPDPVRNVRRFSRVSY*IYTVFEAALY*NTTR 260
RT SC SR + +RH+ + D R ++ R ++ V E L T+R
Sbjct: 226 RTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEKHLRERTSR 285
Query: 261 *NEHYARTSTR 293
Y+R+ R
Sbjct: 286 --RRYSRSRER 294
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 23.0 bits (47), Expect = 2.9
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = +3
Query: 81 RTESCRSRTKRNRHDLTARKIRGRPENAGPDPVRNVRRFSRVSY*IYTVFEAALY*NTTR 260
RT SC SR + +RH+ + D R ++ R ++ V E L T+R
Sbjct: 226 RTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEKHLRERTSR 285
Query: 261 *NEHYARTSTR 293
Y+R+ R
Sbjct: 286 --RRYSRSRER 294
>AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 23.0 bits (47), Expect = 2.9
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = +3
Query: 81 RTESCRSRTKRNRHDLTARKIRGRPENAGPDPVRNVRRFSRVSY*IYTVFEAALY*NTTR 260
RT SC SR + +RH+ + D R ++ R ++ V E L T+R
Sbjct: 226 RTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEKHLRERTSR 285
Query: 261 *NEHYARTSTR 293
Y+R+ R
Sbjct: 286 --RRYSRSRER 294
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 23.0 bits (47), Expect = 2.9
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = +3
Query: 81 RTESCRSRTKRNRHDLTARKIRGRPENAGPDPVRNVRRFSRVSY*IYTVFEAALY*NTTR 260
RT SC SR + +RH+ + D R ++ R ++ V E L T+R
Sbjct: 226 RTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEKHLRERTSR 285
Query: 261 *NEHYARTSTR 293
Y+R+ R
Sbjct: 286 --RRYSRSRER 294
>AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.6 bits (46), Expect = 3.8
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = +3
Query: 81 RTESCRSRTKRNRHDLTARKIRGRPENAGPDPVRNVRRFSRVSY*IYTVFEAALY*NTTR 260
RT SC SR + +RH+ + D R ++ R ++ V E L T+R
Sbjct: 226 RTSSCHSRYEDSRHEDGNSYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEKHLRERTSR 285
Query: 261 *NEHYARTSTR 293
Y+R+ R
Sbjct: 286 --RRYSRSRER 294
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.2 bits (45), Expect = 5.1
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -3
Query: 281 SCVMFVLASSILI*CGLKNCIYLI*HSRKSSYV-SDWIRTRVLR 153
+C+MF++ASS++ L + + H YV WI+ L+
Sbjct: 262 NCIMFMVASSVV----LTVLVLIFHHRTPDRYVMPSWIKMLFLQ 301
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.2 bits (45), Expect = 5.1
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -3
Query: 281 SCVMFVLASSILI*CGLKNCIYLI*HSRKSSYV-SDWIRTRVLR 153
+C+MF++ASS++ L + + H YV WI+ L+
Sbjct: 262 NCIMFMVASSVV----LTVLVLIFHHRTPDRYVMPSWIKMLFLQ 301
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.2 bits (45), Expect = 5.1
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -3
Query: 281 SCVMFVLASSILI*CGLKNCIYLI*HSRKSSYV-SDWIRTRVLR 153
+C+MF++ASS++ L + + H YV WI+ L+
Sbjct: 262 NCIMFMVASSVV----LTVLVLIFHHRTPDRYVMPSWIKMLFLQ 301
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.2 bits (45), Expect = 5.1
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -3
Query: 281 SCVMFVLASSILI*CGLKNCIYLI*HSRKSSYV-SDWIRTRVLR 153
+C+MF++ASS++ L + + H YV WI+ L+
Sbjct: 262 NCIMFMVASSVV----LTVLVLIFHHRTPDRYVMPSWIKMLFLQ 301
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.2 bits (45), Expect = 5.1
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -3
Query: 281 SCVMFVLASSILI*CGLKNCIYLI*HSRKSSYV-SDWIRTRVLR 153
+C+MF++ASS++ L + + H YV WI+ L+
Sbjct: 262 NCIMFMVASSVV----LTVLVLIFHHRTPDRYVMPSWIKMLFLQ 301
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.2 bits (45), Expect = 5.1
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -3
Query: 281 SCVMFVLASSILI*CGLKNCIYLI*HSRKSSYV-SDWIRTRVLR 153
+C+MF++ASS++ L + + H YV WI+ L+
Sbjct: 262 NCIMFMVASSVV----LTVLVLIFHHRTPDRYVMPSWIKMLFLQ 301
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 22.2 bits (45), Expect = 5.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3
Query: 81 RTESCRSRTKRNRHD 125
RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240
>AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein.
Length = 429
Score = 22.2 bits (45), Expect = 5.1
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +2
Query: 623 PDLSAASSGHFGLPRRTLVFK 685
PDL+ S G GLP L +
Sbjct: 336 PDLAGTSQGSAGLPSAILAMR 356
>DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein.
Length = 630
Score = 21.8 bits (44), Expect = 6.7
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = +2
Query: 554 SEPYLPSIGFHGTRTLRQKRKLFPDLSA 637
SE P+ HG R RQ+ + D +
Sbjct: 472 SENNYPTTSIHGDRLQRQREEALADFKS 499
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 6.7
Identities = 6/13 (46%), Positives = 13/13 (100%)
Frame = -3
Query: 281 SCVMFVLASSILI 243
+C+MF++ASS+++
Sbjct: 330 NCIMFMVASSVVL 342
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 6.7
Identities = 6/13 (46%), Positives = 13/13 (100%)
Frame = -3
Query: 281 SCVMFVLASSILI 243
+C+MF++ASS+++
Sbjct: 330 NCIMFMVASSVVL 342
>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
protein.
Length = 1770
Score = 21.8 bits (44), Expect = 6.7
Identities = 7/29 (24%), Positives = 16/29 (55%)
Frame = +2
Query: 443 LRIWVRTGATSPRTSLT*IFKVAESIRTP 529
++ W+ G T + + K+ +++RTP
Sbjct: 513 IKEWIERGTTKSMEAANIMSKLPKTVRTP 541
>AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 8.9
Identities = 19/71 (26%), Positives = 29/71 (40%)
Frame = +3
Query: 81 RTESCRSRTKRNRHDLTARKIRGRPENAGPDPVRNVRRFSRVSY*IYTVFEAALY*NTTR 260
RT SC SR + RH+ + D R ++ R ++ V E L T+R
Sbjct: 226 RTSSCHSRYEDLRHEDRNSYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEKHLRERTSR 285
Query: 261 *NEHYARTSTR 293
Y+R+ R
Sbjct: 286 --RRYSRSRER 294
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,127
Number of Sequences: 438
Number of extensions: 4881
Number of successful extensions: 26
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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