Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1161
         (721 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50260.1 68414.m05635 C2 domain-containing protein low simila...    30   1.3  
At2g28990.1 68415.m03526 leucine-rich repeat protein kinase, put...    30   1.8  
At1g76965.1 68414.m08961 glycine-rich protein                          29   2.3  
At5g42370.1 68418.m05159 expressed protein                             29   4.1  
At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identic...    29   4.1  
At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative...    28   5.4  
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox...    28   5.4  
At5g22740.1 68418.m02656 glycosyl transferase family 2 protein s...    28   7.2  
At2g02800.2 68415.m00225 protein kinase (APK2b) identical to pro...    28   7.2  
At2g02800.1 68415.m00224 protein kinase (APK2b) identical to pro...    28   7.2  
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ...    27   9.5  
At5g37380.2 68418.m04492 DNAJ heat shock N-terminal domain-conta...    27   9.5  
At5g37380.1 68418.m04491 DNAJ heat shock N-terminal domain-conta...    27   9.5  
At5g22390.1 68418.m02612 expressed protein                             27   9.5  
At2g05210.1 68415.m00549 expressed protein                             27   9.5  

>At1g50260.1 68414.m05635 C2 domain-containing protein low
           similarity to CLB1 [Lycopersicon esculentum] GI:2789434;
           contains Pfam profile PF00168: C2 domain
          Length = 675

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -3

Query: 170 RTRVLRPSADLPSRKVVSVSFRARSARFCTTAVQRSAQN 54
           R+RVLRPS  + + + +S  FR  S     T   R A N
Sbjct: 37  RSRVLRPSVKISNFRFISCGFRGNSKNLRLTDSSRKAAN 75


>At2g28990.1 68415.m03526 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 884

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -1

Query: 187 TFRTGSGPAFSGLPRIFLAVRSCRFRFVRDRHDSVRPPFNGQLRT 53
           T+ T SG       R++L+      R+  D HD +  PFNG   T
Sbjct: 179 TYVTQSGSLMMSF-RVYLSNSDASIRYADDVHDRIWSPFNGSSHT 222


>At1g76965.1 68414.m08961 glycine-rich protein 
          Length = 158

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 294 PGTGRIRFPSKPDTPRSSEPILIPKLRIQFAD 389
           PG   + FP KP+ P    P  +P+L + F D
Sbjct: 93  PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124


>At5g42370.1 68418.m05159 expressed protein
          Length = 447

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 568 PFYRIPWNSNAQAEKKTLPGPLGGVFRPL-WVTPSNTR 678
           P Y +  +   Q+ +K +P PL  + R L W TPS  R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322


>At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identical
           to low affinity calcium antiporter CAX2 (GI:1488267)
           [Arabidopsis thaliana]; Ca2+:Cation Antiporter (CaCA)
           Family member PMID:11500563
          Length = 441

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -2

Query: 705 SIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFC--LSVRVPWNPI 574
           S++   SL TS  +  PK P+++   S K  +FC  L++ +P+ P+
Sbjct: 41  SLMEQGSLSTSFPQHTPKAPKNSVLNSIKIVIFCNKLNLLLPFGPL 86


>At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative
           strong similarity to probable NADP-dependent
           oxidoreductase (zeta-crystallin homolog) P1
           [SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
           Arabidopsis thaliana
          Length = 239

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 163 RVRIQSET*DDFRECHIKYIQFLRPH 240
           R+RIQ     DF + + K+++FL PH
Sbjct: 172 RIRIQGFVVSDFYDEYSKFLEFLHPH 197


>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
           lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
           [Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
           thaliana]
          Length = 926

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 512 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 610
           +S +  P  R    ++PYLPS    G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247


>At5g22740.1 68418.m02656 glycosyl transferase family 2 protein
           similar to beta-(1-3)-glucosyl transferase GB:AAC62210
           GI:3687658 from [Bradyrhizobium japonicum], cellulose
           synthase from Agrobacterium tumeficiens [gi:710492] and
           Agrobacterium radiobacter [gi:710493]; contains Pfam
           glycosyl transferase, group 2 family protein domain
           PF00535
          Length = 534

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -1

Query: 235 ASKTVYI*YDTRENRLTFRTGSGPAFSGLPRIFLAVRSCRFRFVRDRHDSVRPPF 71
           ASK + I Y  RENR+ ++ G+     GL R +  V+ C +  + D      P F
Sbjct: 154 ASKGINIRYQIRENRVGYKAGA--LKEGLKRSY--VKHCEYVVIFDADFQPEPDF 204


>At2g02800.2 68415.m00225 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 285 STRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 404
           ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


>At2g02800.1 68415.m00224 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 285 STRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 404
           ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
           autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
           Pfam profile PF00899: ThiF family
          Length = 697

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 516 VSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 641
           ++G    CG  +V NH++LL +S+ L+      ++S  +R +
Sbjct: 45  ITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86


>At5g37380.2 68418.m04492 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9QYI4 DnaJ
           homolog subfamily B member 12 {Mus musculus}; contains
           Pfam profile PF00226: DnaJ domain
          Length = 431

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 263 KRTLRTNIDQTRHRPHPLPVQTRHAPVLRANPYSEVTDP 379
           K T  TN   T  R +P P Q  + P  + NP ++ T+P
Sbjct: 153 KTTFTTNARTTTPRNNP-PAQKTNPPAQKTNPPAQKTNP 190


>At5g37380.1 68418.m04491 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9QYI4 DnaJ
           homolog subfamily B member 12 {Mus musculus}; contains
           Pfam profile PF00226: DnaJ domain
          Length = 431

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 263 KRTLRTNIDQTRHRPHPLPVQTRHAPVLRANPYSEVTDP 379
           K T  TN   T  R +P P Q  + P  + NP ++ T+P
Sbjct: 153 KTTFTTNARTTTPRNNP-PAQKTNPPAQKTNPPAQKTNP 190


>At5g22390.1 68418.m02612 expressed protein
          Length = 202

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 633 ERSGKSFLFCLSVRVPWNPIEG 568
           + S KSFL  LS   PWNP +G
Sbjct: 17  DNSPKSFLDTLSSSSPWNPSKG 38


>At2g05210.1 68415.m00549 expressed protein
          Length = 364

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +2

Query: 497 IFKVAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPR 667
           +  + +S  T     C+  +E Y   +GF  T TLR+KR     L    S +F  PR
Sbjct: 277 LLTLEDSTATLEAFLCNKDAE-YFWGLGFQDTETLRKKRNWL--LGIRESSNFVAPR 330


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,315,780
Number of Sequences: 28952
Number of extensions: 358155
Number of successful extensions: 1055
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)