Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1160
         (781 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59510.1 68418.m07458 expressed protein                             30   1.5  
At2g24980.1 68415.m02987 proline-rich extensin-like family prote...    30   1.5  
At4g02130.2 68417.m00285 glycosyl transferase family 8 protein l...    29   3.5  
At4g02130.1 68417.m00284 glycosyl transferase family 8 protein l...    29   3.5  
At1g07220.1 68414.m00768 expressed protein                             29   3.5  
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...    29   4.6  
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    29   4.6  
At2g45560.1 68415.m05665 cytochrome P450 family protein                29   4.6  
At2g19150.1 68415.m02235 pectinesterase family protein contains ...    29   4.6  
At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative...    28   6.0  
At5g06630.1 68418.m00749 proline-rich extensin-like family prote...    28   6.0  
At4g21800.2 68417.m03154 ATP-binding family protein contains Pfa...    28   6.0  
At4g21800.1 68417.m03153 ATP-binding family protein contains Pfa...    28   6.0  
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox...    28   6.0  
At4g00270.1 68417.m00034 DNA-binding storekeeper protein-related...    28   8.0  
At3g62660.1 68416.m07039 glycosyl transferase family 8 protein l...    28   8.0  
At3g09170.1 68416.m01088 Ulp1 protease family protein contains P...    28   8.0  

>At5g59510.1 68418.m07458 expressed protein
          Length = 144

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 24/65 (36%), Positives = 34/65 (52%)
 Frame = -2

Query: 333 TSTRPGTGRIRFPSKPDTPRSSEPILIRSYGSNLPTSLTYIILSTRGSSPWRPAADMGTN 154
           +S++P   R  F +KP +  SSEPI  RS+ +  PTS     LS  GS+   P     T+
Sbjct: 38  SSSKPVFTR-SFSTKPTSYSSSEPIFRRSFSAK-PTSSKSPFLSRSGSTKC-PVDTSSTS 94

Query: 153 RRDIS 139
           +  IS
Sbjct: 95  KCSIS 99


>At2g24980.1 68415.m02987 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 559

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 3/93 (3%)
 Frame = -1

Query: 319 RHRPHPLPVQTRHAPVLRANPYPKLRIQFADFPYLHYSID*RLFTLETCCGYGYEPARHL 140
           ++ PHP P      P     P PK+  +    PY++ S     ++      Y   P  ++
Sbjct: 44  KYAPHPKPYVKSSPPPQYYTPSPKVNYKSPPPPYVYSSPPPPYYSPSPKVDYKSPPPPYV 103

Query: 139 HVHPSPEF---SRSAESIRTPPQMRCSSRSEPY 50
           +  P P +   S   +    PP    SS   PY
Sbjct: 104 YSSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPY 136


>At4g02130.2 68417.m00285 glycosyl transferase family 8 protein low
           similarity to lgtC of Neisseria sp., GenBank accession
           number U14554, U65788; contains Pfam glycosyl
           transferase family 8 domain PF01501
          Length = 346

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 535 SYRIVPIAHKRNRHDLTARKIRGRPENAGPDPV 437
           S  + PI+H+ N+H L    +RG   +  P PV
Sbjct: 277 SGHVAPISHRWNQHGLGGDNVRGSCRDLHPGPV 309


>At4g02130.1 68417.m00284 glycosyl transferase family 8 protein low
           similarity to lgtC of Neisseria sp., GenBank accession
           number U14554, U65788; contains Pfam glycosyl
           transferase family 8 domain PF01501
          Length = 346

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 535 SYRIVPIAHKRNRHDLTARKIRGRPENAGPDPV 437
           S  + PI+H+ N+H L    +RG   +  P PV
Sbjct: 277 SGHVAPISHRWNQHGLGGDNVRGSCRDLHPGPV 309


>At1g07220.1 68414.m00768 expressed protein
          Length = 507

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = -1

Query: 247 LRIQFADFP-YLHYSID*RLFTLETCCGYGYEPARHLHVHPSPEFSRSAESIRTPPQMRC 71
           L + F  F   L Y +D  +   +T  G+  EP    H+ P   FS + +  +    ++C
Sbjct: 26  LALSFFSFTALLFYKVDDFIAQTKTLAGHNLEPTPW-HIFPRKSFSAATKHSQAYRILQC 84

Query: 70  SSRSEPY 50
           S  S PY
Sbjct: 85  SYFSCPY 91


>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = -1

Query: 712 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 602
           ++T  V P ++ F+H  I +  ++ + V+ + GH+ +
Sbjct: 33  VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 69


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = -1

Query: 712 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 602
           ++T  V P ++ F+H  I +  ++ + V+ + GH+ +
Sbjct: 32  VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 68


>At2g45560.1 68415.m05665 cytochrome P450 family protein
          Length = 512

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = +1

Query: 292 GREADAAGAGSGRCSCVMFVLAS*YFNIMRPQKLYIFNMTLAKIVLRFGLDPD 450
           GR+ +    G+GR  C    LA    ++M    LY F+  L K VL   LD D
Sbjct: 435 GRDYELTPFGAGRRICPGMPLAMKTVSLMLASLLYSFDWKLPKGVLSEDLDMD 487


>At2g19150.1 68415.m02235 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 339

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 78  ICGGVRILSADLENSGEGCTWRCRAGSYPYPQQV 179
           I GG+  +    ++  EGCT + R G YP P +V
Sbjct: 185 ISGGIDFIFGGAQSIFEGCTLKLRVGIYP-PNEV 217


>At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative
           strong similarity to probable NADP-dependent
           oxidoreductase (zeta-crystallin homolog) P1
           [SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
           Arabidopsis thaliana
          Length = 239

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 453 RVRIQSET*DDFRECHIKYIQFLRPH 376
           R+RIQ     DF + + K+++FL PH
Sbjct: 172 RIRIQGFVVSDFYDEYSKFLEFLHPH 197


>At5g06630.1 68418.m00749 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 440

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 4/97 (4%)
 Frame = -1

Query: 319 RHRPHPLPVQTRHAPVLRANPYPKLRIQFADFPYLHYSID*RLFTLETCCGYGYEPARHL 140
           ++ PHP P      P     P PK+  +    PY++ S     ++      Y   P  ++
Sbjct: 50  KYAPHPKPYVYSSPPPPYYTPSPKVNYKSPPPPYVYNSPPPPYYSPSPKVYYKSPPPPYV 109

Query: 139 HVHPSPEFSRSAESI--RTPPQMRCSSRSEP--YLPS 41
           +  P P +   +  +  ++PP     S   P  Y PS
Sbjct: 110 YSSPPPPYYSPSPKVYYKSPPPPYVYSSPPPLYYSPS 146


>At4g21800.2 68417.m03154 ATP-binding family protein contains Pfam
           domain, PF03029: Conserved hypothetical ATP binding
           protein
          Length = 379

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 273 SSEPILIRSYGSNLPTSLTYIILSTRGSSP 184
           +S  I+  ++ S  PT +TY++ + R SSP
Sbjct: 156 ASGAIITEAFASTFPTVVTYVVDTPRSSSP 185


>At4g21800.1 68417.m03153 ATP-binding family protein contains Pfam
           domain, PF03029: Conserved hypothetical ATP binding
           protein
          Length = 379

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 273 SSEPILIRSYGSNLPTSLTYIILSTRGSSP 184
           +S  I+  ++ S  PT +TY++ + R SSP
Sbjct: 156 ASGAIITEAFASTFPTVVTYVVDTPRSSSP 185


>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
           lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
           [Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
           thaliana]
          Length = 926

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 103 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 5
           +S +  P  R    ++PYLPS    G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247


>At4g00270.1 68417.m00034 DNA-binding storekeeper protein-related
           contains similarity to storekeeper protein [Solanum
           tuberosum] gi|14268476|emb|CAC39398; contains PF04504:
           Protein of unknown function, DUF573
          Length = 302

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
 Frame = +2

Query: 146 SRRFVPIS--AAGLQGEEPLVDRIM*VREVGKLDP*LRIRIGSEDRGVSGLDG-KRMRPV 316
           S R +P S  AA +  EE +  ++   ++  KLDP L +RI +E+  +S L G    R  
Sbjct: 27  SPRNIPSSKRAASVAEEETMKKKMKMKKKKKKLDPPLIVRIWNEEDELSILKGLVDYRAK 86

Query: 317 PGL---VDVRALCSF*RVSIL 370
            G    +D  A CSF   SI+
Sbjct: 87  TGFNPKIDWDAFCSFLGSSIV 107


>At3g62660.1 68416.m07039 glycosyl transferase family 8 protein low
           similarity to glycosyl transferase lgtC - Neisseria
           gonorrhoeae, EMBL:AF208062; contains Pfam glycosyl
           transferase family 8 domain PF01501
          Length = 361

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 526 IVPIAHKRNRHDLTARKIRGRPENAGPDPV 437
           + PI H+ N+H L    +RG   +  P PV
Sbjct: 294 VAPIEHRWNQHGLGGDNVRGSCRDLHPGPV 323


>At3g09170.1 68416.m01088 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 1000

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 2/112 (1%)
 Frame = -2

Query: 540 GGRTESCRSRTNETDTTLRLGRSAEG-RRTRVRIQSET*DDFRECHIKYIQFLRPHYIKI 364
           GG+ +SC     +++  L+  +  E    T+    +E  DD        +  + P++   
Sbjct: 603 GGKKKSCSQMDAQSNRPLKRAKDMEHVASTKYVSPTEKLDD-------EVDIVEPNFSLG 655

Query: 363 LTR*NEHNARTSTRPGTGRIR-FPSKPDTPRSSEPILIRSYGSNLPTSLTYI 211
           LT+  E N   S  P  G+ + FPSK    RSS  I  R   SN   ++T I
Sbjct: 656 LTQ--EINDNRSRLPPRGKKKTFPSKVSVLRSSNRIRDRPIQSNSIENMTSI 705


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,511,487
Number of Sequences: 28952
Number of extensions: 383176
Number of successful extensions: 1111
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)