Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1159
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    31   0.17 
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    31   0.22 
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    29   0.67 
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    27   2.7  
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    27   3.6  
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro...    27   3.6  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    26   4.7  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    25   8.2  

>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 375 HNTKYNQYLKMSTTTCNCNSRDRVVYGGNSADSTRE 482
           +++ YN+   M T++C+C+S  +  YGGN A    E
Sbjct: 47  YSSTYNEITNMDTSSCSCSSTPK-SYGGNLAPFDEE 81


>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 15/61 (24%), Positives = 31/61 (50%)
 Frame = +1

Query: 61  SIIQNVVNNLIIDKRRNTMEYCYKLWVGNGQEIVRKYFPLNFRLIMAGNYVKIIYRNYNL 240
           +II   V+N I+D+  +  ++C ++W G   + +R ++  N    ++    K IY +   
Sbjct: 247 AIISQEVHNFIMDQGWSEYQFCNQIWAGKCPKTIRMFYS-NLYKKLSHRDAKSIYHHVRR 305

Query: 241 A 243
           A
Sbjct: 306 A 306


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 375 HNTKYNQYLKMSTTTCNCNSRDRVVYGGNSA 467
           HN  +N + + S T+ +  SR+ V+  GNS+
Sbjct: 617 HNEMFNSFHRSSVTSASIKSREAVLSAGNSS 647


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
 Frame = -2

Query: 177 WEVLSNNFLS--VADPQL---VAVLHGVPSLVNDQVVNYILD 67
           W+VL +++L+  ++ P     V  LHGV + VN  V +YI D
Sbjct: 188 WDVLFHDYLNETLSQPAFSFNVPDLHGVDNKVNQYVFDYIKD 229


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 280 LSFEGLVVDRASERGCSFC 224
           L++EG+ +D +  R CSFC
Sbjct: 558 LAYEGIQIDHSRLRECSFC 576


>SPAC23H4.10c |thi4||thiamine-phosphate
           dipyrophosphorylase/hydroxyethylthiazole kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 579 TPRETARPLDTMVKSPVFLTSTRGSLHLSK 668
           TPRETA+ L  ++ +P      R SL   K
Sbjct: 207 TPRETAKELRNLIATPPCFAQARSSLTTPK 236


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 64  IIQNVVNNLIIDKRRNTMEYCYKLWVGNGQEIVR 165
           +++++  NL I    N +EY   LW  NG  I +
Sbjct: 447 VLKDIFFNLQIGVTFNILEYLRHLWSNNGDAIAK 480


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -1

Query: 598 LAVSRGVHDRTELQGIVELAIVDEEQDVVFYLAGWKNHCSLVLSAL 461
           +A+ +  HD  +   IV L +V+  + +   L  ++NHCS  LS L
Sbjct: 668 VAIVQYFHDLQDYLPIVALNLVEFYELLHTLLVRFRNHCSDYLSDL 713


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,801,939
Number of Sequences: 5004
Number of extensions: 56443
Number of successful extensions: 166
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)