Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1159
         (721 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0776 + 6476743-6477539,6478658-6479481,6479803-6480790,648...    29   2.8  
04_01_0526 - 6901003-6901056,6901070-6901404,6901423-6901607,690...    28   6.5  
10_07_0057 + 12460986-12461036,12461108-12461161,12461420-124614...    28   8.6  

>11_01_0776 + 6476743-6477539,6478658-6479481,6479803-6480790,
            6482633-6483545
          Length = 1173

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 20/84 (23%), Positives = 39/84 (46%)
 Frame = +3

Query: 213  QDHLQKLQPRSEARSTTNPSNERISYGDGVDKHTELVSWKFITLWENNRVYFKIHNTKYN 392
            QDHL +L PR+        SN+ +S    ++K+  L S++    W +  +  K++     
Sbjct: 914  QDHLPELAPRAVQNEKFGSSND-LSIMIQINKYARLPSYE----WRDTDI-SKLNFRLLR 967

Query: 393  QYLKMSTTTCNCNSRDRVVYGGNS 464
              + +   T  C+  D ++ G N+
Sbjct: 968  APMLLEAVTARCHLLDLILIGSNN 991


>04_01_0526 -
           6901003-6901056,6901070-6901404,6901423-6901607,
           6902201-6904641
          Length = 1004

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -1

Query: 550 VELAIVDEEQDVVFYLAGWKNHC 482
           VEL +VDEEQ +V Y   W N C
Sbjct: 723 VELEVVDEEQTIVTY---WANDC 742


>10_07_0057 +
           12460986-12461036,12461108-12461161,12461420-12461482,
           12461666-12461716,12461996-12462057,12462156-12462318,
           12462829-12462939,12463029-12463166,12463248-12463322,
           12463420-12463540,12464827-12464981,12465080-12465154,
           12465270-12465473,12465670-12465786
          Length = 479

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -3

Query: 197 MMSLKFNGKYFLTISCPLPTHSL*QYSMVFRLLSMI 90
           MM L   GK    I CP+P+HSL   SMV R  +++
Sbjct: 152 MMHLLIRGKKD-GILCPIPSHSLYTDSMVLRGATLV 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,775,403
Number of Sequences: 37544
Number of extensions: 383059
Number of successful extensions: 1100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)