Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1159
         (721 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20858| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_22167| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_29864| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_20858| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 265

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 180 KL*THHGRKLCQDHLQKLQPRSEARSTTNP 269
           +L  HHGR+L +DHL    PR   R    P
Sbjct: 199 RLLKHHGRELIKDHLDLPLPRQPKRRRLPP 228


>SB_22167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1612

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +2

Query: 254 VHNQSLE*ENFLRRWCRQAY*TRQLE--VHYLVGEQQSVLQ-DPQ 379
           VHN+S E +NFLR   +Q     ++E  VH  + E Q+VL  DP+
Sbjct: 602 VHNESSESKNFLREDPKQTSNISEIESAVHNELSEGQNVLSLDPK 646


>SB_29864| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +1

Query: 103 RRNTMEYCYKLWVGNGQEIVRKYFPLNFRLIM--AGNYVKIIYRNYNLALKLGPQPIPRM 276
           R N +E   +L V +GQ + R Y  +  + +   A  +V   Y      LKLG  PI   
Sbjct: 158 RHNLVERQVQLTV-DGQSLERDYLLVRLQKVQLAAAGFVTKRYAGLEEVLKLGWLPITER 216

Query: 277 REFPTA 294
           R+F  A
Sbjct: 217 RDFSLA 222


>SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2484

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 553 IVELAIVDEEQDVVFYLAGWKNHCSLVLSALLPPY 449
           IVE   VD+E + + Y A  ++  + V  ALLP Y
Sbjct: 857 IVEPESVDKEVNQILYYADIRSEVAFVAPALLPQY 891


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,482,843
Number of Sequences: 59808
Number of extensions: 438785
Number of successful extensions: 1164
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)