Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1159
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    29   3.3  
AC024751-7|AAK21507.2| 1258|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z72514-9|CAA96680.3|  449|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z68001-3|CAO78709.1|  449|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U49449-1|AAB00117.1|  339|Caenorhabditis elegans olfactory recep...    28   7.7  
U42830-6|AAC48279.2|  339|Caenorhabditis elegans Odorant respons...    28   7.7  

>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/97 (20%), Positives = 46/97 (47%)
 Frame = +3

Query: 192 HHGRKLCQDHLQKLQPRSEARSTTNPSNERISYGDGVDKHTELVSWKFITLWENNRVYFK 371
           HH +K  + HL+K   ++E+ S+++ S+   S        +E    K      +++ + K
Sbjct: 140 HHHKKHAKKHLKKHHKKAESSSSSSSSSSSSSSSSSSSSSSESEDEK-----HHHKKHAK 194

Query: 372 IHNTKYNQYLKMSTTTCNCNSRDRVVYGGNSADSTRE 482
            H  K+++  + S+++ + +S        +S+ S  E
Sbjct: 195 KHLKKHHKKAESSSSSSSSSSSSSSSSSSSSSSSESE 231


>AC024751-7|AAK21507.2| 1258|Caenorhabditis elegans Hypothetical
           protein Y18H1A.3 protein.
          Length = 1258

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 22/72 (30%), Positives = 31/72 (43%)
 Frame = -1

Query: 652 EPRVDVRKTGDFTIVSNGLAVSRGVHDRTELQGIVELAIVDEEQDVVFYLAGWKNHCSLV 473
           +PR D  +TGD    SN +A     HD  ++      A+     D + +L  W+   SLV
Sbjct: 514 DPRNDSSETGDSMSSSNTIAEDNVFHDTDDITN----AVTSWSGDKLAWLQTWRRVISLV 569

Query: 472 LSALLPPYTTRS 437
                 PYT  S
Sbjct: 570 -----DPYTNSS 576


>Z72514-9|CAA96680.3|  449|Caenorhabditis elegans Hypothetical
           protein T10B10.8 protein.
          Length = 449

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -2

Query: 297 HRRRKFSHSRDWLWTELQSEVVVSVNDLDIVSGHDES 187
           H+ RK+ +++  LW   + +V+V + DLDI+   D S
Sbjct: 92  HKARKYQYTKIRLWAMTEFDVIVHL-DLDILPTRDIS 127


>Z68001-3|CAO78709.1|  449|Caenorhabditis elegans Hypothetical
           protein T10B10.8 protein.
          Length = 449

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -2

Query: 297 HRRRKFSHSRDWLWTELQSEVVVSVNDLDIVSGHDES 187
           H+ RK+ +++  LW   + +V+V + DLDI+   D S
Sbjct: 92  HKARKYQYTKIRLWAMTEFDVIVHL-DLDILPTRDIS 127


>Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical
           protein C29E6.1a protein.
          Length = 812

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 546 STMPWSSVRS*TPRETARPLDTMVKSPVFLTST 644
           ST   ++  + TP+ + +P  T  KSPV +T+T
Sbjct: 388 STKKLTTTTTTTPKPSQKPTTTTTKSPVVITTT 420


>U49449-1|AAB00117.1|  339|Caenorhabditis elegans olfactory receptor
           Odr-10 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +2

Query: 494 PARQVENDVLFFIYNRQFNDALELGTIVNASGDRKAVGHDGEVAGLPDIYSWFIT 658
           P   +EN   F I  ++FN + +LG I N++           V+G+  +Y +F T
Sbjct: 65  PIMHIENTTFFLISRKRFNYSTKLGKI-NSAFYCACFATSFVVSGVHFVYRYFAT 118


>U42830-6|AAC48279.2|  339|Caenorhabditis elegans Odorant response
           abnormal protein10 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +2

Query: 494 PARQVENDVLFFIYNRQFNDALELGTIVNASGDRKAVGHDGEVAGLPDIYSWFIT 658
           P   +EN   F I  ++FN + +LG I N++           V+G+  +Y +F T
Sbjct: 65  PIMHIENTTFFLISRKRFNYSTKLGKI-NSAFYCACFATSFVVSGVHFVYRYFAT 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,719,405
Number of Sequences: 27780
Number of extensions: 324066
Number of successful extensions: 1069
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)