Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1157
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    31   0.29 
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    27   2.7  
SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po...    27   4.7  

>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 27/111 (24%), Positives = 46/111 (41%)
 Frame = -1

Query: 655 KPIASISAIQMGFDDRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSLGWLRP*RRSG 476
           KP+        G  DR+  +  E  L + H   P  S  +T S  +     W     +S 
Sbjct: 81  KPLIEEPEENYGIKDRIPVYYEEEELPEPHVTSPTKSEFATTSTCMK----WSSKTTKSE 136

Query: 475 IIPRMVXRTTXRSAECMNQMSETAVPLVLSSITIATTSHQ*GKTNLSHDGL 323
           I   +  R +   A C+ ++ ++  P   S +T  ++SHQ G ++ S   L
Sbjct: 137 I--EVEWRDSYLDANCIKEIIDSRRPSFASLLTKKSSSHQ-GSSHSSQPSL 184


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +1

Query: 196 CGSQAFIATLLFDPSMSALPSLXXKIRQAL 285
           CGS   I  +LF  S S L S   KI Q L
Sbjct: 511 CGSSPAIKLILFSKSFSVLQSTSEKIEQLL 540


>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 452

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = -3

Query: 539 LHSEHILAGFARLASALEAFRHNPADGXSHHRPLGRVHEPNVRNCGSSRTEQYYYRNDK 363
           +HS+  +   A ++SAL      P  G ++ RPL   HE  V   G+ +   YY  +++
Sbjct: 51  VHSKRTVLTSADISSALRTLNVEPLYGFNNSRPL-EFHEAAV---GAGQNSLYYLDDEE 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,135,178
Number of Sequences: 5004
Number of extensions: 56706
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)