Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1157
         (892 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC114377-1|AAI14378.1|   44|Homo sapiens Unknown (protein for MG...    68   4e-11
BC034532-1|AAH34532.1|  327|Homo sapiens calcium channel, voltag...    31   7.4  
AF162692-1|AAF14538.1|  327|Homo sapiens putative voltage-gated ...    31   7.4  
AF142625-1|AAF03090.1|  327|Homo sapiens calcium channel gamma 4...    31   7.4  

>BC114377-1|AAI14378.1|   44|Homo sapiens Unknown (protein for
           MGC:134704) protein.
          Length = 44

 Score = 68.1 bits (159), Expect = 4e-11
 Identities = 30/35 (85%), Positives = 31/35 (88%)
 Frame = -3

Query: 254 GRADIEGSKSNVAMNAWLPQASYPCGNFSGTXC*K 150
           GRADIEGSKS+VAMNAW PQASYPCGNFS T C K
Sbjct: 3   GRADIEGSKSDVAMNAWPPQASYPCGNFSDTSCLK 37


>BC034532-1|AAH34532.1|  327|Homo sapiens calcium channel,
           voltage-dependent, gamma subunit 4 protein.
          Length = 327

 Score = 30.7 bits (66), Expect = 7.4
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -3

Query: 806 GNCXRINNFTQEXSFDHDTNSEL 738
           G+C RIN+F ++  +DHD++  L
Sbjct: 78  GHCFRINHFPEDNDYDHDSSEYL 100


>AF162692-1|AAF14538.1|  327|Homo sapiens putative voltage-gated
           calcium channel gamma-4 subunit protein.
          Length = 327

 Score = 30.7 bits (66), Expect = 7.4
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -3

Query: 806 GNCXRINNFTQEXSFDHDTNSEL 738
           G+C RIN+F ++  +DHD++  L
Sbjct: 78  GHCFRINHFPEDNDYDHDSSEYL 100


>AF142625-1|AAF03090.1|  327|Homo sapiens calcium channel gamma 4
           subunit protein.
          Length = 327

 Score = 30.7 bits (66), Expect = 7.4
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -3

Query: 806 GNCXRINNFTQEXSFDHDTNSEL 738
           G+C RIN+F ++  +DHD++  L
Sbjct: 78  GHCFRINHFPEDNDYDHDSSEYL 100


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,546,340
Number of Sequences: 237096
Number of extensions: 2181456
Number of successful extensions: 3324
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3324
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11437206932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)