Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1157
         (892 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28290.2 68415.m03434 chromatin remodeling protein, putative ...    29   3.1  
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ...    29   3.1  
At5g63930.1 68418.m08028 leucine-rich repeat transmembrane prote...    28   7.2  

>At2g28290.2 68415.m03434 chromatin remodeling protein, putative (SYD)
            similar to transcriptional activator HBRM [Homo sapiens]
            GI:414117; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain; identical to cDNA putative chromatin
            remodeling protein SYD (SPLAYED) GI:13603720
          Length = 3529

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 661  DEKPIASISAIQMGFDDRVSRFECETRLVKSHCLEPP 551
            D +P +S++A+Q   +D+V    CE  +V + C   P
Sbjct: 3039 DTEPSSSLTAVQKNIEDQVETAGCEFVVVSTGCSTEP 3075


>At2g28290.1 68415.m03433 chromatin remodeling protein, putative (SYD)
            similar to transcriptional activator HBRM [Homo sapiens]
            GI:414117; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain; identical to cDNA putative chromatin
            remodeling protein SYD (SPLAYED) GI:13603720
          Length = 3574

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 661  DEKPIASISAIQMGFDDRVSRFECETRLVKSHCLEPP 551
            D +P +S++A+Q   +D+V    CE  +V + C   P
Sbjct: 3039 DTEPSSSLTAVQKNIEDQVETAGCEFVVVSTGCSTEP 3075


>At5g63930.1 68418.m08028 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 1102

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 174 VTTGITGLWQPSVHSDVAF*SFDVGSSIIAXKNSPSVGLFTHQK 305
           V  G TG+   +  SD    S ++ S +++ K SPS+G   H K
Sbjct: 57  VPCGWTGVMCSNYSSDPEVLSLNLSSMVLSGKLSPSIGGLVHLK 100


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,887,354
Number of Sequences: 28952
Number of extensions: 311000
Number of successful extensions: 596
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2090971320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)