Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1156
         (634 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0407 + 17345382-17345579,17345711-17346235                       29   3.1  
03_06_0065 - 31399791-31399874,31399956-31400165,31400407-314005...    29   3.1  
02_02_0156 - 7277793-7277875,7278535-7278638,7278808-7279211,727...    29   3.1  
03_02_0604 + 9793057-9793165,9793360-9793445                           29   4.1  
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157...    28   5.4  
01_06_1777 + 39818212-39819696                                         28   7.1  
07_03_1304 - 25629822-25629839,25630091-25631148,25631784-256349...    27   9.4  
06_01_0918 + 7083570-7083705,7083977-7084008                           27   9.4  

>09_04_0407 + 17345382-17345579,17345711-17346235
          Length = 240

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 286 VVRSYHPRDYAERL*GRSQPSRIRQGYAHCGAPRSR 179
           + + YHP+  A     +S  S IR+ YAHC  P +R
Sbjct: 4   LAQEYHPKLPATNHYCKSLSSLIRETYAHCHVPCAR 39


>03_06_0065 -
           31399791-31399874,31399956-31400165,31400407-31400526,
           31401166-31401225,31401670-31401879,31402512-31402587,
           31403010-31403173,31403254-31403316,31403640-31403727,
           31403810-31404460,31405102-31405149,31405334-31405902
          Length = 780

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 203 SLWSPEKSGGSKQCDFTSRVSHSKRETRRRSPFGS 99
           S+WSP+  G S +C    ++  S+  + R SP  S
Sbjct: 299 SVWSPDLYGSSPRCASPEKIMGSQERSPRSSPLRS 333


>02_02_0156 -
           7277793-7277875,7278535-7278638,7278808-7279211,
           7279403-7279543,7279700-7279904,7279984-7280093
          Length = 348

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 28/76 (36%), Positives = 32/76 (42%)
 Frame = -3

Query: 356 SNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLC*TPLRPKPA*PNPARICSLWSPEKSG 177
           SNTA  ER      L  A+ R      LP AG   + LRPKP  P PAR  +     KS 
Sbjct: 279 SNTAAKER------LTRAVNRVQK-LTLPKAGQS-SSLRPKPRDPAPARSSAATGVRKSS 330

Query: 176 GSKQCDFTSRVSHSKR 129
            S+        S  KR
Sbjct: 331 TSQATPLARNNSTLKR 346


>03_02_0604 + 9793057-9793165,9793360-9793445
          Length = 64

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/43 (41%), Positives = 20/43 (46%)
 Frame = -3

Query: 206 CSLWSPEKSGGSKQCDFTSRVSHSKRETRRRSPFGSRRSMLSV 78
           CS  SPEK GGS + D    V HS R  +    F   R  L V
Sbjct: 23  CSRGSPEKGGGSDK-DMICVVDHSSRVIQAPDSFDLLRLELDV 64


>01_07_0197 +
           41912207-41912652,41913226-41913800,41913828-41915748,
           41915836-41916049,41916143-41916394,41916469-41916528,
           41916646-41916776,41916898-41917012,41917084-41917239
          Length = 1289

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 592 YKEFLARG-ARKVTTGITGLWQPSVHSDVLFD 500
           YK F A G  RKV  GIT  + PS+  D+ FD
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFD 664


>01_06_1777 + 39818212-39819696
          Length = 494

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +2

Query: 185 SRGSTVSISLPDSARLASALEAFSIIPRMVASHHRP-LGRVHEPNVRNCGSSRT 343
           +R  T SI +      +  ++A  I+ RMV  HHRP  G  +      C + RT
Sbjct: 399 TRKETFSILISGLCSESRFIDAAQIMERMVKGHHRPEAGEFNNVIEGLCSAGRT 452


>07_03_1304 - 25629822-25629839,25630091-25631148,25631784-25634928,
            25635454-25636293
          Length = 1686

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 136  ECETRLVKSHCLEPPDFSG 192
            ECE R++++ CLE   FSG
Sbjct: 987  ECEARMLRNECLEKSLFSG 1005


>06_01_0918 + 7083570-7083705,7083977-7084008
          Length = 55

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 541 GLWQPSVHSDVLFDPSMSALPIIAKQNSP 455
           GLW+PS H+  L  P+ S L     + +P
Sbjct: 10  GLWRPSAHAAALRAPASSVLSTTPPRQTP 38


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,752,315
Number of Sequences: 37544
Number of extensions: 379547
Number of successful extensions: 904
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)