Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1156
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   4.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.9  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   9.9  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 279 RTTGRSAECMNQMSETAVPLVLSS 350
           +  G+  +C N MSE  V ++L +
Sbjct: 170 KENGKEFDCHNYMSELTVDILLET 193


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -3

Query: 326 SFGHLVHALGRAAGGAKLPSAGLC*TPLRPKP 231
           S   LV A+   AGG   PSAG    P+ P P
Sbjct: 393 SMSALVSAVRSPAGGQLPPSAG---APMPPIP 421


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -3

Query: 206 CSLWSPEKSGGSKQCDFTSRVSHSKRETRRRSPFGSRRSML 84
           CS    ++S GS     ++R   S    RR S FGS    L
Sbjct: 21  CSNSQSQRSSGSSISRNSNRSESSGYCGRRPSTFGSSNEAL 61


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 393 LSHDGLIPAHVPF*WVNNPT 452
           +SH   +  HVP  W+  PT
Sbjct: 694 VSHTQRLVVHVPPRWIVEPT 713


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -3

Query: 206 CSLWSPEKSGGSKQCDFTSRVSHSKRETRRRSPFGSRRSML 84
           CS    ++S GS     ++R   S    RR S FGS    L
Sbjct: 21  CSNSQSQRSSGSSISRNSNRSESSGYCGRRPSTFGSSNEAL 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,376
Number of Sequences: 438
Number of extensions: 3690
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)