Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1155
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0183 - 21681673-21682524                                         31   1.1  
05_05_0272 - 23738514-23738817,23739382-23740748                       30   1.5  
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581     29   2.6  
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157...    29   3.4  
01_07_0346 + 42889121-42890406,42896115-42896118                       28   7.9  

>03_05_0183 - 21681673-21682524
          Length = 283

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = -3

Query: 365 SQAFIATLLFDPSMSALPIIAKQNSPSVGLFTHQKGTELGLDRRETG 225
           SQAF A LL D + +A+P++  Q  P+    T  +  E    RR TG
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPAPETETETE-EEPPRQRRRTG 274


>05_05_0272 - 23738514-23738817,23739382-23740748
          Length = 556

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 542 GHLRYS-LTDVPPQSNSPPGSVSNRITREF*T 634
           G  RY+ +TDVPP  N P   V N IT EF T
Sbjct: 398 GVFRYNQMTDVPPAVNGPLHVVPNVITAEFRT 429


>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
          Length = 311

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 154 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 56
           G LV  L R   GG    SAG+C   S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236


>01_07_0197 +
           41912207-41912652,41913226-41913800,41913828-41915748,
           41915836-41916049,41916143-41916394,41916469-41916528,
           41916646-41916776,41916898-41917012,41917084-41917239
          Length = 1289

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -2

Query: 426 YKEFLARG-ARKVTTGITGLWQPSVHSDVAF*SFDVG 319
           YK F A G  RKV  GIT  + PS+  D+AF S  +G
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669


>01_07_0346 + 42889121-42890406,42896115-42896118
          Length = 429

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 676 PSVQSGDVAENARRRLKLPRDPVRDTARRGV*LGR 572
           PSV   D   N RRR + P  P R + ++G  L R
Sbjct: 12  PSVSGDDGEPNPRRRARTPPPPPRQSPKQGEALER 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,469,909
Number of Sequences: 37544
Number of extensions: 446783
Number of successful extensions: 1120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)