Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1155
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   2.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   2.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   2.7  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   4.7  
X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           21   8.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.3  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 139 ALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTL 29
           ALGR AGG    S+ L L+ +   +SL  +   +LTL
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSLIFTILCILTL 41


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 139 ALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTL 29
           ALGR AGG    S+ L L+ +   +SL  +   +LTL
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSLIFTILCILTL 41


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 139 ALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTL 29
           ALGR AGG    S+ L L+ +   +SL  +   +LTL
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSLIFTILCILTL 41


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 139 ALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTL 29
           ALGR AGG    S+ L L+ +   +SL  +   +LTL
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSLIFTILCILTL 41


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 113 RTTGRSAECMNQMSETAVPLVLSS 184
           +  G+  +C N MSE  V ++L +
Sbjct: 170 KENGKEFDCHNYMSELTVDILLET 193


>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 566 LSKNNAGVLRPAQRGQKPRGSKRAKAGLI 480
           L  N  G+ +PA R    RG  +  +GLI
Sbjct: 23  LGDNIQGITKPAIRRLARRGGVKRISGLI 51


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 574  RYICQRITQVS*GQLSEDRNLAGAKGQKLA 485
            + + + +T  + GQL    NL   KG KLA
Sbjct: 1112 KILAKVLTSSNSGQLISVENLLAQKGLKLA 1141


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,044
Number of Sequences: 438
Number of extensions: 4151
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)