Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1150
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   2.5  
SPAC12B10.13 |||CTLH domain|Schizosaccharomyces pombe|chr 1|||Ma...    25   7.7  
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.7  

>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 427 IPRSYAQRLCYILPHLCTFTDIKQLINHNYYTFKPKD 317
           +P+S A+++  ILP      D+ Q +    Y+FKP D
Sbjct: 693 VPKSEAEKVYSILP-----IDVPQSVAEETYSFKPSD 724


>SPAC12B10.13 |||CTLH domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = -3

Query: 364 IKQLINHNYYTFKPKDTLNR--LNRTNHATSLLAFPPKSFKP 245
           +++ +N  +    P    N+  LN      SLL FPP S+ P
Sbjct: 134 VERCLNFAHENLAPLAPSNQKFLNSLELTMSLLCFPPSSYSP 175


>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 477

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -3

Query: 382 LCTFTDIKQLINHNYYTFKPKDTLNRLNRTNHATSL 275
           L  F  I   +N+NYYT    DT N L   +  T L
Sbjct: 203 LVMFQAINPYLNNNYYTHDTVDT-NALEENSWITKL 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,093,411
Number of Sequences: 5004
Number of extensions: 39158
Number of successful extensions: 77
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)