Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1150
         (564 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0334 + 16779883-16780150,16780618-16781828                       29   3.4  
10_01_0242 + 2534316-2535482                                           28   5.9  

>09_04_0334 + 16779883-16780150,16780618-16781828
          Length = 492

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -3

Query: 325 PKDTLNRLNRTNHATSLLAFPPKSFKPMSYAIKQIKFCAIC 203
           P +   R   TN   SLL +PP + KP  +   + + C  C
Sbjct: 337 PPNAFLRFCLTNEKFSLLQYPPCNLKPTRFIEVEGELCCAC 377


>10_01_0242 + 2534316-2535482
          Length = 388

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +1

Query: 109 PSIIKLTNIIYFIYKSNICMAFKTVTIYLYH 201
           PSI+ + N+IY+  KS   +AF+  T  LYH
Sbjct: 203 PSIL-VGNVIYWPLKSKHILAFELATSRLYH 232


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,370,128
Number of Sequences: 37544
Number of extensions: 210768
Number of successful extensions: 335
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)