Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1150
         (564 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069242-1|AAL39387.1| 1030|Drosophila melanogaster GM01572p pro...    30   1.9  
AJ487522-1|CAD31790.1| 1836|Drosophila melanogaster Polehole pro...    30   1.9  
AE014298-827|AAF46107.1| 1793|Drosophila melanogaster CG4790-PA ...    30   1.9  

>AY069242-1|AAL39387.1| 1030|Drosophila melanogaster GM01572p
           protein.
          Length = 1030

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 294 QITQLHSSRSRPKVSNQCHMP*NRL 220
           Q+ +LHS   R KV N CH P  RL
Sbjct: 758 QLMRLHSGDIRVKVQNHCHRPARRL 782


>AJ487522-1|CAD31790.1| 1836|Drosophila melanogaster Polehole protein.
          Length = 1836

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 294  QITQLHSSRSRPKVSNQCHMP*NRL 220
            Q+ +LHS   R KV N CH P  RL
Sbjct: 1564 QLMRLHSGDIRVKVQNHCHRPARRL 1588


>AE014298-827|AAF46107.1| 1793|Drosophila melanogaster CG4790-PA
            protein.
          Length = 1793

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 294  QITQLHSSRSRPKVSNQCHMP*NRL 220
            Q+ +LHS   R KV N CH P  RL
Sbjct: 1521 QLMRLHSGDIRVKVQNHCHRPARRL 1545


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,249,699
Number of Sequences: 53049
Number of extensions: 382221
Number of successful extensions: 626
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2193288294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)