Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1150
         (564 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66565-4|CAA91480.1|  384|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z47069-1|CAA87338.1|  964|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>Z66565-4|CAA91480.1|  384|Caenorhabditis elegans Hypothetical
           protein T04F8.4 protein.
          Length = 384

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
 Frame = -3

Query: 394 ILPHLCTFTDI----KQLINHNYYTFKPKD 317
           I P +C+F D     KQ++  N  TFKPKD
Sbjct: 275 ITPPMCSFKDANSNEKQIVKRNARTFKPKD 304


>Z47069-1|CAA87338.1|  964|Caenorhabditis elegans Hypothetical
           protein F36G3.1 protein.
          Length = 964

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = -3

Query: 397 YILPHLCTFTDIKQLINHNYYTFKPKDTLNRLNRTNHATSLLAFPPKSFKPMSYAIKQIK 218
           Y  P   + TDI  +INH+  T K  DT+   N            P++  P    +KQ+ 
Sbjct: 33  YATPLASSLTDISNVINHS-VTIKVPDTIADANDLEPGERTPVSTPRAISPP--IVKQVM 89

Query: 217 F 215
           +
Sbjct: 90  Y 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,342,958
Number of Sequences: 27780
Number of extensions: 210628
Number of successful extensions: 395
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)