Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1150
         (564 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g13900.1 68415.m01542 DC1 domain-containing protein contains ...    28   3.7  
At1g61400.1 68414.m06919 S-locus protein kinase, putative simila...    27   6.5  

>At2g13900.1 68415.m01542 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 661

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = -3

Query: 397 YILPHLCTFTDIKQLINHNYYTFKPKDTLNRLNRTNH 287
           Y   H CT   +  L+  + Y  KP  T+  + R  H
Sbjct: 582 YACDHCCTTLHVHCLLGEDMYMLKPSQTITYIKREVH 618


>At1g61400.1 68414.m06919 S-locus protein kinase, putative similar
           to KI domain interacting kinase 1 [Zea mays]
           gi|2735017|gb|AAB93834; contains S-locus glycoprotein
           family domain, Pfam:PF00954
          Length = 821

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/37 (37%), Positives = 15/37 (40%)
 Frame = +1

Query: 259 WAGTRGVKLRDLSXXXXXXXXXXXMCNNCGLLAV*YQ 369
           W G RGV L D +            C   GLL V YQ
Sbjct: 728 WCGARGVNLLDQALGDSCHPYEVGRCVQIGLLCVQYQ 764


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,518,126
Number of Sequences: 28952
Number of extensions: 189006
Number of successful extensions: 316
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)