Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1146
(578 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 0.88
02_04_0276 + 21491150-21492761,21492891-21492947,21493817-214938... 30 1.2
07_03_0846 - 21983581-21986055 29 2.0
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960... 28 6.2
10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914... 27 8.2
06_01_0107 - 854756-854883,855126-856968 27 8.2
03_05_0823 - 27970038-27970258,27970279-27970544,27970608-279706... 27 8.2
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56... 27 8.2
01_06_1777 + 39818212-39819696 27 8.2
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 0.88
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -3
Query: 231 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 97
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>02_04_0276 +
21491150-21492761,21492891-21492947,21493817-21493870,
21493994-21494022
Length = 583
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Frame = -3
Query: 318 RTFGSCTRPSGRWCEATIRGISLNASKAEAS--LAESGKDMLTVEPRESG--GSKQCDFT 151
R GS RP C A I+ +S + AEA LA G D++ +G G+ Q D
Sbjct: 86 RLVGSARRPDAGTCAALIKKLSASGRTAEARRVLAACGPDVMAYNAMVAGYCGAGQLDAA 145
Query: 150 SRV 142
R+
Sbjct: 146 RRL 148
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +2
Query: 89 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 238
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>03_05_0951 +
29093962-29094373,29095291-29095388,29095689-29096087,
29096999-29097724,29097802-29097968,29098046-29098311,
29098396-29098581,29099072-29099346,29099435-29099683
Length = 925
Score = 27.9 bits (59), Expect = 6.2
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -3
Query: 240 KAEASLAESGKDMLTVEP-RESGGSKQCDFTSRVSHSKRETR-RRSPFGSRRSMLSVFFL 67
K+ AS A G D P R GG K+ S + SKR + R + F +L L
Sbjct: 4 KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHSGPL 63
Query: 66 TRASR 52
TRA+R
Sbjct: 64 TRAAR 68
>10_06_0105 -
10790092-10790323,10791092-10791234,10791322-10791429,
10791796-10791903,10793133-10797686,10798347-10798461,
10799597-10799724,10799843-10800043,10800158-10800227,
10801233-10801314,10801433-10801556,10801761-10801778
Length = 1960
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 254 LIPRMVASHHRPLGRVHEPNVRNCGSSRT 340
L+P A+H LGR H+ N + GS+ T
Sbjct: 535 LVPPTNAAHQPSLGRDHDSNKKTSGSAGT 563
>06_01_0107 - 854756-854883,855126-856968
Length = 656
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = -1
Query: 563 QKSYHRDNWLVAAKRS*RLAF*SFDVGSSYHCEAKFAKR 447
+ S H D+WL A S RL D H EA A R
Sbjct: 205 ESSPHGDDWLTLAAASSRLLVRGLDAAPVLHLEAHHAGR 243
>03_05_0823 -
27970038-27970258,27970279-27970544,27970608-27970657,
27971272-27971538,27971633-27972001,27972373-27973278
Length = 692
Score = 27.5 bits (58), Expect = 8.2
Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Frame = +2
Query: 17 RHRTELYPDLRSR-DARVKKKTDSIDLRDPNGLRRRVSRFECET--RLVKSHCLEPPDSR 187
RH L ++RS D KT ++L GL + L SH L +
Sbjct: 144 RHVRMLTHEIRSTLDRHTILKTTLVELGGTLGLEECALWMPSRSGSSLQLSHTLRHQITV 203
Query: 188 GSTVSISLPDSARLASALEAFRLIPRMVASHHRPL-GRVHEPNV 316
GSTVSI+LP ++ S+ A + + RPL GR P V
Sbjct: 204 GSTVSINLPVVNQVFSSNRAIIIPHTSPLARIRPLAGRYVPPEV 247
>02_01_0083 -
566201-567127,567223-567464,567623-567880,568173-568298,
568420-568489
Length = 540
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 212 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEA 108
AR C W PESR ++ V ++A ++R+ A
Sbjct: 449 ARECLQWEPESRPTMSEVVQILATIAPSSRKHAAA 483
>01_06_1777 + 39818212-39819696
Length = 494
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +2
Query: 182 SRGSTVSISLPDSARLASALEAFRLIPRMVASHHRP-LGRVHEPNVRNCGSSRT 340
+R T SI + + ++A +++ RMV HHRP G + C + RT
Sbjct: 399 TRKETFSILISGLCSESRFIDAAQIMERMVKGHHRPEAGEFNNVIEGLCSAGRT 452
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,039,071
Number of Sequences: 37544
Number of extensions: 333819
Number of successful extensions: 951
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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