Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1143
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    31   0.082
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    29   0.44 
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    26   4.1  
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom...    25   5.4  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    25   5.4  
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   5.4  
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    25   7.1  
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac...    25   9.4  
SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos...    25   9.4  

>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 31.5 bits (68), Expect = 0.082
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 191 SGCGRCRVWSMFVRYVRFSELDFNIMRPQKLYIF 292
           +GCG+  VW  +VR+V F E          LY++
Sbjct: 108 NGCGKSYVWPSYVRFVDFDERYTRFANKYSLYLY 141


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 374 ARKIRGRPENAGPDPVRNVRRFSRV 300
           AR I GRPEN G   ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1274

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -2

Query: 343  RVRIQSET*DDFRECHIKYIQFLRPHYIKI*LAKTNITHE 224
            +V + S+  D  +E H+KY+Q    + +++ LAK +I  E
Sbjct: 1069 QVDLLSKLADQEKEKHLKYLQSSYKNSLEVQLAKLDIVKE 1108


>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 233

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 228 TNIDQTRHRPHPLPVQTRHAPV 163
           +N+D  +  PHP P Q    PV
Sbjct: 100 SNLDSVKSLPHPWPFQKESRPV 121


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 116 FPYLHYSID*RLFTLETCCGYGYEPARHL 30
           +P+   S+D R+F LE+  GY  EP   L
Sbjct: 159 YPFDLDSLDKRIFKLESKIGYADEPLSEL 187


>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 215

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 438 RSAQNWHGQGESDCLIKTKHCDGPAGVDA 524
           R   N  G+ ++DCLI    C    G+D+
Sbjct: 25  RGTLNSKGKNDNDCLIMCMRCRKVKGIDS 53


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = -1

Query: 458 VPVLS*PLNGGRTESCRSRTKRNRHDLTARKIRGRPENAGPDPVRNVRRFS 306
           VP+   PL+   T+     T   RH  T  + +    N GPD + +   +S
Sbjct: 211 VPIFRIPLSDYETDDMDDGTPLQRHVATLNQYQSPIFNLGPDILEDEPSYS 261


>SPAC4G9.13c |vps26|pep8|retromer complex subunit
           Vps26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 412 HDSVRPPFNGQLRTGTDKGN 471
           HD V+  F GQ+    DKGN
Sbjct: 61  HDGVKIEFIGQIENTYDKGN 80


>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
           glycosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = +3

Query: 285 IYLI*HSRKSSYVSDWIRTRVLRPSADLPSRKVVSVSFRARSARFCTTAVQRSAQNWHGQ 464
           +YL      S Y +D  RTR++ PSA + +    ++       R   T V  S +   G+
Sbjct: 136 VYLTTLYLDSPYTTDLQRTRLILPSAKIDTYTTYNIDGAELPNRVGNTLVYESRETITGE 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,248,040
Number of Sequences: 5004
Number of extensions: 45316
Number of successful extensions: 108
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)