Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1143
(533 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0098 + 25560158-25560925 32 0.33
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 31 0.58
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 29 1.8
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 29 3.1
04_03_0732 + 19095320-19095827,19095848-19096621,19096863-190969... 29 3.1
03_05_0379 + 23628200-23628366,23629074-23629133,23630177-236302... 28 4.1
12_02_0854 + 23697826-23698033,23699111-23699276,23699430-236994... 28 5.4
11_08_0081 - 28216179-28216381,28216590-28216657,28217131-282172... 28 5.4
05_04_0162 + 18645459-18645827,18645934-18646149,18646224-186462... 28 5.4
11_02_0088 - 8191097-8191193,8191683-8191816 27 7.2
08_01_0025 - 184899-185384,185707-185940,187156-187341,188108-18... 27 7.2
04_04_0433 + 25163111-25163471,25163943-25164154,25164420-251647... 27 7.2
03_05_0377 + 23613181-23613342,23614469-23614501,23614606-236148... 27 7.2
05_05_0276 + 23771233-23771268,23773552-23773897,23774425-237745... 27 9.5
02_04_0628 + 24589313-24589472,24589604-24589765,24589850-245899... 27 9.5
>05_06_0098 + 25560158-25560925
Length = 255
Score = 31.9 bits (69), Expect = 0.33
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = -3
Query: 207 HRPHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRIWVRTGATSP 28
HRP P P + P L +P + V I P PT F + + ++++ + T P
Sbjct: 31 HRPPPPPPSSSSQPALPPSPRTVVPRTIDTTPFPTTFVQADTASFKQVVQMLTGSDTTPP 90
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 31.1 bits (67), Expect = 0.58
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Frame = -3
Query: 228 TNIDQTRH------RPHPLPVQTRHAPVLRANP 148
T IDQ H + H +PVQ H+PVL+ NP
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNP 356
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 198 HPLPVQTRHAPVLRANPYSEVTDPICRLPL 109
H L + RH P L+A P S + C+LPL
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLPL 136
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -3
Query: 192 LPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 79
+P Q + A + A+P + V C LP P+LF L L
Sbjct: 292 IPYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329
>04_03_0732 +
19095320-19095827,19095848-19096621,19096863-19096906,
19097191-19097250
Length = 461
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 204 RPHPLPVQTRHAPVLRANPYSEVTDP 127
RP+PL V +RHA VL + V DP
Sbjct: 133 RPNPLDVVSRHAGVLSRGDHCLVVDP 158
>03_05_0379 +
23628200-23628366,23629074-23629133,23630177-23630209,
23630253-23630665,23631522-23632008,23632623-23633334
Length = 623
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -2
Query: 520 STPAGPSQCFVLIRQSDSPCPC 455
S P G S CF + SPCPC
Sbjct: 314 SCPCGASFCFGCAAPAHSPCPC 335
>12_02_0854 +
23697826-23698033,23699111-23699276,23699430-23699466,
23699531-23700145
Length = 341
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = -1
Query: 230 ARTSTRPGTGRIRFPSKPDTPRSSE 156
A TST PG GR R PS P TP S+
Sbjct: 16 AATSTDPGRGRKRPPS-PSTPTPSD 39
>11_08_0081 -
28216179-28216381,28216590-28216657,28217131-28217298,
28217370-28217436,28217509-28217576,28218256-28218420,
28218490-28218556,28218629-28218696,28219855-28219992,
28220189-28220353,28221227-28221304,28221380-28221532,
28222753-28222823,28223077-28223203,28223306-28223565,
28223679-28223842,28224287-28224450,28225873-28226159
Length = 826
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = -3
Query: 246 LKRT*RTNIDQTRHRPHPLPVQTRHAPVLRANPYSEVTDP--ICRLPLPTLFYRLEALHL 73
+K + N+D RP P PV LRA PY P + + L + L ++++
Sbjct: 1 MKPSPAANLDVRVERPRPPPVHPHRPGSLRARPYYRRWTPWIVAAIALSCVVVFLVSMYV 60
Query: 72 GDLLR 58
D R
Sbjct: 61 NDCPR 65
>05_04_0162 +
18645459-18645827,18645934-18646149,18646224-18646278,
18646545-18646672,18647134-18647217,18648742-18648867,
18648949-18649086
Length = 371
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1
Query: 218 TRPGTGRIRFPSKPDTPRSSEPILIPKLR 132
TRP TG+ P K D RS + I KLR
Sbjct: 108 TRPRTGKAALPLKRDRTRSKRFLEIQKLR 136
>11_02_0088 - 8191097-8191193,8191683-8191816
Length = 76
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 161 RTGACRVWTGSGCGRCRVWSMFVRYVRFSELDF 259
R+ C V G CGR +F+R + S LDF
Sbjct: 42 RSVRCSVGNGDACGRRTALRVFLRNLTHSLLDF 74
>08_01_0025 -
184899-185384,185707-185940,187156-187341,188108-188158
Length = 318
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 483 LDSRIPLVRASSELTVERRSYRIVPIAHETKPTRP 379
LD+ IP+ R E + E R I+P + P+ P
Sbjct: 274 LDNEIPITRTKIESSSEVRDLEILPTGNAALPSSP 308
>04_04_0433 +
25163111-25163471,25163943-25164154,25164420-25164701,
25164794-25164916,25165511-25165664,25165754-25165965,
25166143-25166212,25166294-25166424
Length = 514
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +3
Query: 420 CTTAVQRSAQNWHGQGESDCLIKTKHCDGPAGVDA 524
CT++ +R A W G G L HC PA A
Sbjct: 26 CTSSSRRRASPWGGAGRLIRLRLRGHCPSPASARA 60
>03_05_0377 +
23613181-23613342,23614469-23614501,23614606-23614879,
23615105-23615585,23616174-23616846
Length = 540
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 514 PAGPSQCFVLIRQSDSPCPC 455
P G S CF Q SPCPC
Sbjct: 246 PCGVSFCFNCAGQVHSPCPC 265
>05_05_0276 +
23771233-23771268,23773552-23773897,23774425-23774541,
23774712-23774810,23774949-23775016,23775107-23775181,
23775386-23775931,23776040-23776092,23776163-23776204,
23776314-23776458,23776541-23776651,23777496-23777921,
23778116-23778373
Length = 773
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -1
Query: 395 RNRHDLTARKIRGR-PENAGPDPVRNVR 315
R +H TA ++ PEN GP PV + R
Sbjct: 238 RKQHKQTANSVQNTGPENVGPKPVNSPR 265
>02_04_0628 +
24589313-24589472,24589604-24589765,24589850-24589983,
24590108-24590275,24590481-24590562,24590734-24591512
Length = 494
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = -3
Query: 183 QTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRIW 52
+ RH P++ + EV+ + L L Y ++ L + +LL +W
Sbjct: 100 ELRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKPLRMNELLNLW 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,894,699
Number of Sequences: 37544
Number of extensions: 346655
Number of successful extensions: 1109
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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