Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1143
         (533 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z81119-8|CAB03340.1|  504|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U23529-9|AAL32210.1|  713|Caenorhabditis elegans G-protein-linke...    29   2.8  
U23529-8|AAL32209.1|  682|Caenorhabditis elegans G-protein-linke...    29   2.8  
AF117300-1|AAF26201.1|  713|Caenorhabditis elegans G protein-lin...    29   2.8  
AF075245-1|AAD13747.1|  682|Caenorhabditis elegans G protein-lin...    29   2.8  
AF039047-11|AAB94230.1|  354|Caenorhabditis elegans Prion-like-(...    29   2.8  
U64833-8|AAB04820.1|  432|Caenorhabditis elegans Hypothetical pr...    27   8.5  
AC024843-6|AAF60844.3|  525|Caenorhabditis elegans Hypothetical ...    27   8.5  

>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
            C25H3.8 protein.
          Length = 2148

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -3

Query: 237  T*RTNIDQTRHRPHPLPVQ---TRHAPVLRANPYSEVTDPI 124
            T +++ID T H PHP+ VQ   T+   V+   P   V+ P+
Sbjct: 904  TLKSSIDITNHLPHPIAVQTEGTKGGEVMSVEPNGVVSVPL 944


>Z81119-8|CAB03340.1|  504|Caenorhabditis elegans Hypothetical
           protein T10H4.10 protein.
          Length = 504

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +1

Query: 298 DTRENRLTFRTGSGPAFSGLPRIFLAVRSCRFRFVRDRHDSVRPPFN 438
           D    +L  R   G   +G   IF  VR    RF++ R D++  PFN
Sbjct: 200 DPEFEKLVSRLAKGFENTGFLDIFCPVRILESRFLKWRQDTIFEPFN 246


>U23529-9|AAL32210.1|  713|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 1, isoform b protein.
          Length = 713

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 254 LTR*NEHNARTSTRPGTGRIRFPSKPDT 171
           LT  NE+   TS++PG  R+  P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584


>U23529-8|AAL32209.1|  682|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 1, isoform a protein.
          Length = 682

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 254 LTR*NEHNARTSTRPGTGRIRFPSKPDT 171
           LT  NE+   TS++PG  R+  P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553


>AF117300-1|AAF26201.1|  713|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-1a protein.
          Length = 713

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 254 LTR*NEHNARTSTRPGTGRIRFPSKPDT 171
           LT  NE+   TS++PG  R+  P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584


>AF075245-1|AAD13747.1|  682|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-1b protein.
          Length = 682

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 254 LTR*NEHNARTSTRPGTGRIRFPSKPDT 171
           LT  NE+   TS++PG  R+  P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553


>AF039047-11|AAB94230.1|  354|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 51
           protein.
          Length = 354

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = -3

Query: 222 IDQTRHRPHPLPVQTRHAP--VLRANPYSEVTDPICRLPLPTLFYRLEALHLGD 67
           +D   + P P P Q  H P   +R NP      P+ + P+  L   L A H+GD
Sbjct: 53  VDLESNAPPPAPRQQHHVPPSAVRPNPMPP-QRPVAQQPVRAL-SALHAAHIGD 104


>U64833-8|AAB04820.1|  432|Caenorhabditis elegans Hypothetical
           protein B0507.3 protein.
          Length = 432

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -1

Query: 212 PGTGRIRFPSKPDTPRSSEPILIPKLRI 129
           P    ++  SKP TP  + P+L+P++ +
Sbjct: 324 PNPAMVQKSSKPSTPIPAPPVLVPQVEL 351


>AC024843-6|AAF60844.3|  525|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.3b protein.
          Length = 525

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 379 RSCRFRFVRDRHDSVRPPFNGQLRTGTDKGN 471
           ++ R +F +  H  + PP  G++R   D GN
Sbjct: 411 QAARIQFFQSLHTLIPPPIFGKMRKCVDSGN 441


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,741,311
Number of Sequences: 27780
Number of extensions: 267706
Number of successful extensions: 814
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)