Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1142
(668 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe... 29 0.61
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 28 1.1
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 4.3
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 5.6
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom... 25 7.5
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 25 7.5
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 25 9.9
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch... 25 9.9
SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|... 25 9.9
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 25 9.9
SPAC3A12.09c |||urease accessory protein UreD |Schizosaccharomyc... 25 9.9
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 25 9.9
>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 29.1 bits (62), Expect = 0.61
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -2
Query: 610 ARKIRGRPENAGPDPVRNVRRFSRV 536
AR I GRPEN G ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 427 SGCGRCRVWSMFVRNVRFSELVF*YNAAQKLYIF 528
+GCG+ VW +VR V F E + LY++
Sbjct: 108 NGCGKSYVWPSYVRFVDFDERYTRFANKYSLYLY 141
>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 231
Score = 26.2 bits (55), Expect = 4.3
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = -1
Query: 281 TGATSPRTSSPEFSRSAESIRTPPQMRCSS--RSEPYLPSIGF 159
+ ++S +SSP RS+ +TPP S + P+ P +GF
Sbjct: 3 SSSSSSGSSSPASKRSSRKRQTPPMPELPSFLLAFPHAPPLGF 45
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 25.8 bits (54), Expect = 5.6
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = -1
Query: 206 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 69
MR + E Y+ + G H T Q LF D + H L RRT
Sbjct: 1 MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47
>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 233
Score = 25.4 bits (53), Expect = 7.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -1
Query: 464 TNIDQTRHRPHPLPVQTRHAPV 399
+N+D + PHP P Q PV
Sbjct: 100 SNLDSVKSLPHPWPFQKESRPV 121
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 352 FPYLHYSID*RLFTLETCCGYGYEPARHL 266
+P+ S+D R+F LE+ GY EP L
Sbjct: 159 YPFDLDSLDKRIFKLESKIGYADEPLSEL 187
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 65 RVFDGVTQSGLKTPPRGPGRV 127
RVF G +SGLK +GP V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419
>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 632
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/53 (24%), Positives = 23/53 (43%)
Frame = +1
Query: 1 PVPIPEPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPW 159
PV + G TV+ P+S+ + +P+ P A+ + CL + W
Sbjct: 132 PVSLEVRGRNTVTFYGPTSIFGTSFTSSPRPPPSASIEDTYPIIHCLQLFFKW 184
>SPCC11E10.04 |||mitochondrial ATPase expression protein
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 443
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 197 STAFAAVSGYS-LRTLKIQVRMYVEMSRRFVPI 292
S F A +G++ ++ +++ +R+Y +M R VPI
Sbjct: 318 SLQFRAPAGHARIKNIELFIRLYSQMYRHCVPI 350
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 65 RVFDGVTQSGLKTPPRGPGRV 127
RVF G +SGLK +GP V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419
>SPAC3A12.09c |||urease accessory protein UreD |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 290
Score = 25.0 bits (52), Expect = 9.9
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Frame = -2
Query: 268 LHVHPHLNFQGPQRVSGHRRKCGALRVP---NHISLL*DSMELERSGRKENSSRTSRRRL 98
LH H+N Q R S + C +++P +LL D +++ + R
Sbjct: 140 LHGRSHINEQWSMR-SYVSKNCIQMKIPASNQRKTLLRDVLKIFDEPNLHIGLKAERMHH 198
Query: 97 QATLG--YPVEHSFLKTRERLLKRFR 26
+G Y + FLKT+E +L ++R
Sbjct: 199 FECIGNLYLIGPKFLKTKEAVLNQYR 224
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 25.0 bits (52), Expect = 9.9
Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Frame = -1
Query: 434 HPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALH-----LGDLLRIWVRTGAT 270
HP ++ R+ P+ N Y+ + + L + L + + +G ++ ++V +G+T
Sbjct: 254 HPFYMEQRYIPIGTTNTYTSASHGVLMLSSNGMEVLLRSTYIKYRMIGGIIDLFVYSGST 313
Query: 269 -SPRTSSPEFSRSAESIRTP 213
SP+ + ++ +SI TP
Sbjct: 314 VSPKYTIQQY---VQSIGTP 330
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,882,607
Number of Sequences: 5004
Number of extensions: 61692
Number of successful extensions: 179
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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