Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1142
         (668 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    25   0.49 
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    24   1.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.1  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          23   2.6  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          23   2.6  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          23   2.6  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          23   2.6  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    23   2.6  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   2.6  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          23   3.5  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   4.6  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   6.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.1  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   8.0  

>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = -1

Query: 596 RKAGERGSGSSPKRKTIFASVILNIYSF*AALY*NTNSLKRTLRTNIDQTRHRPHPLPV 420
           R   +R    S +RK I  S + N Y    + Y N N+  + L  NI+     P P+PV
Sbjct: 66  RSRDKRERERSKERKII--SSLSNNYISNISNYNNNNNYNKKLYYNINYIEQIPVPVPV 122


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -1

Query: 566 SPKRKTIFASVILNIYSF*AALY*NTNSLKRTLRTNIDQTRHRPHPLPV 420
           S +RK I  S + N Y    + Y N N+  + L  NI+     P P+PV
Sbjct: 314 SKERKII--SSLSNNYISNISNYNNNNNYNKKLYYNINYIEQIPVPVPV 360


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -1

Query: 275 ATSPRTSSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFH 156
           ++S  T+SP  S  +  +R      CS  + P+   + FH
Sbjct: 324 SSSTTTTSPMTSTKSTIVRNHLNSTCSVTNSPHQKKLRFH 363


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = -2

Query: 661 RTESCRSRTKRNRHDLTARKIRGRPENAGPDPVRNVRRFSRVSY*IYTVFEPHYIKILTR 482
           RT SC SR + +RH+           +   D  R  ++  R    ++ V E H  +  +R
Sbjct: 226 RTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEKHLRERTSR 285

Query: 481 *NEHYARTSTR 449
               Y+R+  R
Sbjct: 286 --RRYSRSRER 294


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = -2

Query: 661 RTESCRSRTKRNRHDLTARKIRGRPENAGPDPVRNVRRFSRVSY*IYTVFEPHYIKILTR 482
           RT SC SR + +RH+           +   D  R  ++  R    ++ V E H  +  +R
Sbjct: 226 RTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEKHLRERTSR 285

Query: 481 *NEHYARTSTR 449
               Y+R+  R
Sbjct: 286 --RRYSRSRER 294


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = -2

Query: 661 RTESCRSRTKRNRHDLTARKIRGRPENAGPDPVRNVRRFSRVSY*IYTVFEPHYIKILTR 482
           RT SC SR + +RH+           +   D  R  ++  R    ++ V E H  +  +R
Sbjct: 226 RTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEKHLRERTSR 285

Query: 481 *NEHYARTSTR 449
               Y+R+  R
Sbjct: 286 --RRYSRSRER 294


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = -2

Query: 661 RTESCRSRTKRNRHDLTARKIRGRPENAGPDPVRNVRRFSRVSY*IYTVFEPHYIKILTR 482
           RT SC SR + +RH+           +   D  R  ++  R    ++ V E H  +  +R
Sbjct: 226 RTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEKHLRERTSR 285

Query: 481 *NEHYARTSTR 449
               Y+R+  R
Sbjct: 286 --RRYSRSRER 294


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = -2

Query: 661 RTESCRSRTKRNRHDLTARKIRGRPENAGPDPVRNVRRFSRVSY*IYTVFEPHYIKILTR 482
           RT SC SR + +RH+           +   D  R  ++  R    ++ V E H  +  +R
Sbjct: 226 RTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEKHLRERTSR 285

Query: 481 *NEHYARTSTR 449
               Y+R+  R
Sbjct: 286 --RRYSRSRER 294


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
 Frame = -1

Query: 275 ATSPRTSSPEFSRSAESIRTPP---QMRCSSRSEPYLP-SIGFHGTRTLRQKRKLFPDLS 108
           A S  TS+P F   A+     P       ++ +  + P S+ F G     Q     PDL+
Sbjct: 284 AESEHTSTPNFLSEAKIFPPTPGSFNFSMAALATEHTPLSVKFPGMGHGLQP----PDLA 339

Query: 107 AASSGHFGLPRRTLVFK 57
             S G  GLP   L  +
Sbjct: 340 GTSQGSAGLPSAILAMR 356


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = -2

Query: 661 RTESCRSRTKRNRHDLTARKIRGRPENAGPDPVRNVRRFSRVSY*IYTVFEPHYIKILTR 482
           RT SC SR + +RH+           +   D  R  ++  R    ++ V E H  +  +R
Sbjct: 226 RTSSCHSRYEDSRHEDGNSYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEKHLRERTSR 285

Query: 481 *NEHYARTSTR 449
               Y+R+  R
Sbjct: 286 --RRYSRSRER 294


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 661 RTESCRSRTKRNRHD 617
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -1

Query: 188 SEPYLPSIGFHGTRTLRQKRKLFPDLSA 105
           SE   P+   HG R  RQ+ +   D  +
Sbjct: 472 SENNYPTTSIHGDRLQRQREEALADFKS 499


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/29 (24%), Positives = 16/29 (55%)
 Frame = -1

Query: 299 LRIWVRTGATSPRTSSPEFSRSAESIRTP 213
           ++ W+  G T    ++   S+  +++RTP
Sbjct: 513 IKEWIERGTTKSMEAANIMSKLPKTVRTP 541


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 18/71 (25%), Positives = 29/71 (40%)
 Frame = -2

Query: 661 RTESCRSRTKRNRHDLTARKIRGRPENAGPDPVRNVRRFSRVSY*IYTVFEPHYIKILTR 482
           RT SC SR +  RH+           +   D  R  ++  R    ++ V E H  +  +R
Sbjct: 226 RTSSCHSRYEDLRHEDRNSYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEKHLRERTSR 285

Query: 481 *NEHYARTSTR 449
               Y+R+  R
Sbjct: 286 --RRYSRSRER 294


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,049
Number of Sequences: 438
Number of extensions: 5037
Number of successful extensions: 32
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)