Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1141
         (701 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1VKD3 Cluster: Transketolase subunit A; n=1; Psychrofl...    33   5.1  
UniRef50_Q5CWX0 Cluster: Membrane associated protein with 2 tran...    33   9.0  

>UniRef50_Q1VKD3 Cluster: Transketolase subunit A; n=1;
           Psychroflexus torquis ATCC 700755|Rep: Transketolase
           subunit A - Psychroflexus torquis ATCC 700755
          Length = 217

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = +2

Query: 8   IIYNVTKKNVNYKFKISARKLVSGKRLAISSYYIHEHIY*KKNQKHN*MIKLLGR 172
           I+Y + K N+N+K K  +R ++S    A + Y I++H+   K  + N + K   R
Sbjct: 35  ILYTIMKNNINFKKKSRSRIILSKGHAAPALYSIYDHLGLLKKNELNTLRKFKSR 89


>UniRef50_Q5CWX0 Cluster: Membrane associated protein with 2
           transmembrane domains at the N- terminus and a
           phosphatidylinositol 4-kinase domain at the C-terminus;
           n=3; Cryptosporidium|Rep: Membrane associated protein
           with 2 transmembrane domains at the N- terminus and a
           phosphatidylinositol 4-kinase domain at the C-terminus -
           Cryptosporidium parvum Iowa II
          Length = 2158

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = +2

Query: 152 MIKLLGRSVT*SFQVLVQ*PSQQFTGYQNIKLENFSI-YSLNKGYCLNVNVIVYIILYRF 328
           +I+ +G  +T S  VLV    Q+F G Q+IK+EN S   S+NK     V+++ +  L R 
Sbjct: 270 IIERIGMDLTVSELVLVVLQYQKFIGEQSIKIENNSFDKSMNKLGVFEVHIVTH--LCRT 327

Query: 329 W 331
           W
Sbjct: 328 W 328


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 578,368,009
Number of Sequences: 1657284
Number of extensions: 10045493
Number of successful extensions: 21763
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21760
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55785129165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)