Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1141
         (701 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76340.1 68414.m08869 integral membrane family protein contai...    29   3.9  

>At1g76340.1 68414.m08869 integral membrane family protein contains
           Pfam profile  PF00892: Integral membrane protein;
           similar to GDP-mannose transporter (SP:Q941R4)
           [Arabidopsis thaliana] and to LPG2 protein (GI:9998817)
           [Leishmania mexicana]
          Length = 372

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/45 (24%), Positives = 25/45 (55%)
 Frame = +2

Query: 230 YQNIKLENFSIYSLNKGYCLNVNVIVYIILYRFWECAYPVSITLL 364
           + ++ L   S+Y +  GYCL+ +++  I  +   +  YP ++T +
Sbjct: 25  WYSVFLRQASVYGVAAGYCLSASLLSIINKWAIMKFPYPGALTAM 69


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,477,464
Number of Sequences: 28952
Number of extensions: 216240
Number of successful extensions: 434
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)