Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1132
         (483 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    31   0.12 
SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyce...    29   0.28 
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    26   2.6  

>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 30.7 bits (66), Expect = 0.12
 Identities = 21/46 (45%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +3

Query: 246 FRLVSTHVPCAARY-IQRRGETILCT-SVGKWFHTYGCNKFRLLSV 377
           FR +  HV  A  + I+ RG   L T SVG  F TY C K  LL V
Sbjct: 27  FRSIG-HVSNAVPFDIEARGTHFLVTTSVGNTFQTYDCEKLNLLFV 71


>SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 29.5 bits (63), Expect = 0.28
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = -2

Query: 449 YFHLQCRHDICL-QPYMLWVLDAHHNAKQAEFVTAISVKPLSYARTKYCFTTSLDISSST 273
           Y+H     DI   QPY L V +A         V A++  P+ +  T Y F  S  ++S  
Sbjct: 49  YYHSTVTDDISKSQPYRLGVDEAGRGPVLGPMVYAVAYCPVDFDLTNYGFADSKTLASLK 108

Query: 272 R 270
           R
Sbjct: 109 R 109


>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 413 GDKYHVYTASENNIYAWRRGCEL 481
           GD +H+Y  S+++I++W  G EL
Sbjct: 345 GDHHHLYLTSDHSIWSW--GVEL 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,872,556
Number of Sequences: 5004
Number of extensions: 36112
Number of successful extensions: 76
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)