Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1132
(483 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0914 + 25920277-25920405,25920783-25920810,25920890-259209... 33 0.16
03_06_0604 - 35006004-35008580 30 1.1
04_03_0263 - 13605195-13607366,13607535-13607702 28 3.4
04_03_0258 - 13573730-13573816,13573881-13574666,13575043-135751... 28 3.4
04_03_0260 - 13580396-13582990 28 4.5
04_03_0256 - 13564070-13564456,13564543-13565299,13565734-135665... 28 4.5
04_03_0265 - 13638816-13641348,13641432-13641490 27 6.0
04_03_0264 - 13619329-13621708,13621742-13621830 27 6.0
03_06_0002 + 30917082-30917146,30917594-30917975,30918083-309182... 27 7.9
>06_03_0914 +
25920277-25920405,25920783-25920810,25920890-25920990,
25921356-25921479,25921793-25921903,25922222-25922397,
25922766-25922848,25922935-25923007,25923630-25923695,
25923776-25923818,25924600-25924739,25924878-25925090,
25925397-25925481,25925558-25925852,25926855-25927110,
25927237-25927450,25927701-25927912,25928054-25928203
Length = 832
Score = 32.7 bits (71), Expect = 0.16
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +3
Query: 288 IQRRG-ETILCTSVGKWFHTYGCNKFRLL 371
+QR G ET + SVGK FH Y C K L+
Sbjct: 22 VQRLGTETFVAVSVGKAFHVYNCAKLNLV 50
>03_06_0604 - 35006004-35008580
Length = 858
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Frame = -2
Query: 449 YFHLQCRHDI--C-LQPYMLWVLDAHHNAKQAEFVTAISVKP 333
Y H +CR I C ++P + +LD HHNAK ++F A V P
Sbjct: 606 YLHEECRDCIVHCDIKPENI-LLDEHHNAKVSDFGLAKLVNP 646
>04_03_0263 - 13605195-13607366,13607535-13607702
Length = 779
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = -2
Query: 467 VSRHKCYFHLQCRHDIC---LQPYMLWVLDAHHNAKQAEF 357
+++ CY H +CR I ++P + +LD + NAK A+F
Sbjct: 572 IAKGLCYLHEECRRKIAHLDIKPQNI-LLDENFNAKLADF 610
>04_03_0258 -
13573730-13573816,13573881-13574666,13575043-13575126,
13575254-13575322,13575324-13576228,13576517-13576784
Length = 732
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = -2
Query: 467 VSRHKCYFHLQCRHDIC---LQPYMLWVLDAHHNAKQAEF 357
+++ CY H +CR I ++P + +LD + NAK A+F
Sbjct: 542 IAKGLCYLHEECRRKIAHLDIKPQNI-LLDENFNAKLADF 580
>04_03_0260 - 13580396-13582990
Length = 864
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = -2
Query: 467 VSRHKCYFHLQCRHDIC---LQPYMLWVLDAHHNAKQAEF 357
+++ CY H +CR I ++P + +LD + NAK A+F
Sbjct: 657 IAKGLCYLHEECRRKIVHLDIKPQNI-LLDENFNAKLADF 695
>04_03_0256 -
13564070-13564456,13564543-13565299,13565734-13566535,
13566884-13566917
Length = 659
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = -2
Query: 467 VSRHKCYFHLQCRHDIC---LQPYMLWVLDAHHNAKQAEF 357
+++ CY H +CR I ++P + +LD + NAK A+F
Sbjct: 481 IAKGLCYLHEECRRKIAHLDIKPQNI-LLDDNFNAKLADF 519
>04_03_0265 - 13638816-13641348,13641432-13641490
Length = 863
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = -2
Query: 467 VSRHKCYFHLQCRHDIC---LQPYMLWVLDAHHNAKQAEF 357
+++ CY H +CR I ++P + +LD NAK A+F
Sbjct: 655 IAKGLCYLHEECRRKIAHLDIKPQNI-LLDEKFNAKLADF 693
>04_03_0264 - 13619329-13621708,13621742-13621830
Length = 822
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = -2
Query: 467 VSRHKCYFHLQCRHDIC---LQPYMLWVLDAHHNAKQAEF 357
+++ CY H +CR I ++P + +LD NAK A+F
Sbjct: 614 ITKGLCYLHEECRRKIAHLDIKPQNI-LLDEKFNAKLADF 652
>03_06_0002 +
30917082-30917146,30917594-30917975,30918083-30918279,
30918372-30918513,30919287-30919415,30919460-30919471
Length = 308
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 280 LDISKDVVKQYFVRA*ESGFTLMAVTNSACLALW*AS 390
LD+++ ++K +R GF L +T S A+W AS
Sbjct: 169 LDVAQQIIKADGIRGLYRGFGLSVMTYSPSSAVWWAS 205
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,225,693
Number of Sequences: 37544
Number of extensions: 205108
Number of successful extensions: 356
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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