Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1132
         (483 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC133025-1|AAI33026.1|  951|Homo sapiens WD repeat domain 36 pro...    33   0.70 
AK095312-1|BAC04527.1|  895|Homo sapiens protein ( Homo sapiens ...    33   0.70 
AF385437-1|AAM43838.1|  951|Homo sapiens T-cell activation WD re...    33   0.70 

>BC133025-1|AAI33026.1|  951|Homo sapiens WD repeat domain 36
           protein.
          Length = 951

 Score = 32.7 bits (71), Expect = 0.70
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +3

Query: 243 GFR---LVSTHVPCAARYIQRRGETILCTSVGKWFHTYGCNKFRLLSVVVSI 389
           GFR   L S  +P   R+   +    + T VGK FHTY   K  L++V  S+
Sbjct: 72  GFRALGLFSNDIPHVVRFSALKRRFYVTTCVGKSFHTYDVQKLSLVAVSNSV 123


>AK095312-1|BAC04527.1|  895|Homo sapiens protein ( Homo sapiens
           cDNA FLJ37993 fis, clone CTONG2011815. ).
          Length = 895

 Score = 32.7 bits (71), Expect = 0.70
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +3

Query: 243 GFR---LVSTHVPCAARYIQRRGETILCTSVGKWFHTYGCNKFRLLSVVVSI 389
           GFR   L S  +P   R+   +    + T VGK FHTY   K  L++V  S+
Sbjct: 16  GFRALGLFSNDIPHVVRFSALKRRFYVTTCVGKSFHTYDVQKLSLVAVSNSV 67


>AF385437-1|AAM43838.1|  951|Homo sapiens T-cell activation WD
           repeat protein protein.
          Length = 951

 Score = 32.7 bits (71), Expect = 0.70
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +3

Query: 243 GFR---LVSTHVPCAARYIQRRGETILCTSVGKWFHTYGCNKFRLLSVVVSI 389
           GFR   L S  +P   R+   +    + T VGK FHTY   K  L++V  S+
Sbjct: 72  GFRALGLFSNDIPHVVRFSALKRRFYVTTCVGKSFHTYDVQKLSLVAVSNSV 123


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,582,318
Number of Sequences: 237096
Number of extensions: 1244268
Number of successful extensions: 2202
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2202
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4327667848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)