Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1132
         (483 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04940.1 68417.m00718 transducin family protein / WD-40 repea...    31   0.54 
At5g15640.1 68418.m01830 mitochondrial substrate carrier family ...    29   1.6  
At5g20410.1 68418.m02427 1,2-diacylglycerol 3-beta-galactosyltra...    27   8.8  

>At4g04940.1 68417.m00718 transducin family protein / WD-40 repeat
           family protein contains seven G-protein beta WD-40
           repeats
          Length = 910

 Score = 30.7 bits (66), Expect = 0.54
 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 288 IQRRG-ETILCTSVGKWFHTYGCNKFRLLSVVVSIQDP 398
           +QR G ET +  SVGK F  Y C K  L  V++S Q P
Sbjct: 21  VQRLGTETFVTVSVGKAFQIYNCAKLNL--VIISPQLP 56


>At5g15640.1 68418.m01830 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 323

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 280 LDISKDVVKQYFVRA*ESGFTLMAVTNSACLALW*AS 390
           +D++  ++K Y VR    GF L  +T S   A W AS
Sbjct: 168 IDVATKIIKSYGVRGLYRGFGLSVMTYSPSSAAWWAS 204


>At5g20410.1 68418.m02427 1,2-diacylglycerol
           3-beta-galactosyltransferase, putative /
           monogalactosyldiacylglycerol synthase, putative / MGDG
           synthase, putative identical to
           monogalactosyldiacylglycerol synthase [gi:3367638] from
           Arabidopsis thaliana, similar to MGDG synthase type A
           [gi:9884651] from Glycine max
          Length = 468

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 157 HKNVHHNISKIRQYDSYSE 101
           H++ HH+I +I+ YD   E
Sbjct: 35  HRHTHHHIHRIKSYDDIDE 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,505,546
Number of Sequences: 28952
Number of extensions: 177978
Number of successful extensions: 301
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)