Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1131
         (761 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0371 + 28364896-28366182,28366510-28366623,28366861-283671...    33   0.25 
01_06_1327 + 36337578-36337976,36338068-36338397,36338523-363386...    30   2.3  
01_05_0397 + 21753095-21753814                                         29   3.1  
11_01_0438 - 3349506-3351239                                           29   5.3  
08_02_1417 - 26922775-26922986,26923102-26923291,26923816-269239...    29   5.3  
06_01_0333 + 2404459-2404857,2404917-2405009,2405428-2405522,240...    29   5.3  
05_03_0206 - 10049244-10049360,10057973-10058367,10058456-100590...    29   5.3  
01_06_0270 + 28048449-28048577,28048915-28048978,28049537-280496...    28   7.1  

>02_05_0371 +
           28364896-28366182,28366510-28366623,28366861-28367125,
           28367981-28368105
          Length = 596

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 15/47 (31%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
 Frame = -3

Query: 426 LRAVSDRGVGGELDNSAGVLGIVGV-DIQASTDNSSALHDDLVTVSR 289
           +R + D GVG E++   G   I+G+  +Q STD+S+++ +++  + R
Sbjct: 390 MRRMEDVGVGLEIETRPGGCAIIGLKPLQLSTDHSTSIEEEVHRIKR 436


>01_06_1327 +
           36337578-36337976,36338068-36338397,36338523-36338628,
           36338722-36339104
          Length = 405

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 23/83 (27%), Positives = 36/83 (43%)
 Frame = +1

Query: 181 ERQTPSRMQHPGFD*LQYALPAQHSPVEVLNSVTGAPRYCHKIVMKSGTVVRTCLDVNPN 360
           E+QTPSR  H G      A+ A  SP +V+ +  G  R    ++ ++G  V   +D  P+
Sbjct: 193 EQQTPSRRDHAG----STAVVAVVSPTQVVVANAGDSR---AVISRAGVPVALSVDHKPD 245

Query: 361 DSQHTCRVVELASNTAIADSAKV 429
                 R+          D A+V
Sbjct: 246 RPDELERIEAAGGRVIYWDGARV 268


>01_05_0397 + 21753095-21753814
          Length = 239

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 343 LDVNPNDSQHTCRVVELASNTAIADSAKVKSCAVCNK 453
           +D N + ++H    +++  +TA +DS  V SC VC +
Sbjct: 8   VDTNWSAAEHDHIAIDIGDSTAGSDSDDVPSCVVCTE 44


>11_01_0438 - 3349506-3351239
          Length = 577

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +1

Query: 241 PAQHSPVEVLNSVTGAPRYCHKIVMKSGTVV---RTCLDVNPNDSQHTCRVVELASNTAI 411
           P   S  EVL    GAPR  +++ +++GT     RTC  + P D+     + E+    A+
Sbjct: 295 PDSPSHAEVL-VCGGAPRGAYRLALRNGTFAPADRTCGRIAPTDANPVWAMEEMPLPRAM 353

Query: 412 AD 417
            D
Sbjct: 354 GD 355


>08_02_1417 -
           26922775-26922986,26923102-26923291,26923816-26923928,
           26924032-26924112,26925329-26926661
          Length = 642

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = -1

Query: 164 SSYPVHCYIGST*CNSLFRIALVEQRRRMLHFLP 63
           + + ++CYIGS+  +   +  +VE+ RR+ + +P
Sbjct: 137 NGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMP 170


>06_01_0333 +
           2404459-2404857,2404917-2405009,2405428-2405522,
           2406146-2406219,2406307-2406395,2406745-2406858
          Length = 287

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 609 LGVPNSVLSAPNLVLTEKNSKEFIVNLSSFSYICPHL 719
           L V N +L+    +       EF V +S+F+YI PHL
Sbjct: 220 LSVQNRLLNIDENIYIPITKGEFAVIVSTFNYIIPHL 256


>05_03_0206 -
           10049244-10049360,10057973-10058367,10058456-10059011,
           10078853-10079032
          Length = 415

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 159 RTAGTRSRAPNPQ*NATPRIRLTSIRSTCATFACRSLEQRY 281
           R A T +R PN   N     R   +R  C+  +CR L + +
Sbjct: 170 RRAITPNRRPNIAVNGAMEARFVLLRKVCSRLSCRDLVEEF 210


>01_06_0270 +
           28048449-28048577,28048915-28048978,28049537-28049638,
           28049971-28050021,28050075-28050172,28050395-28050485,
           28050718-28050782,28050913-28051107,28051207-28051326,
           28051592-28051662,28051787-28052012,28052330-28052407,
           28052507-28052735,28052958-28053097,28053571-28053699
          Length = 595

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -1

Query: 539 LFENEIRSDQTNVASGREKEIDPAPLQLSL 450
           L   EI +D+T  A+G +K+I P P+ LS+
Sbjct: 66  LVRKEI-ADETERATGHKKQISPVPIYLSI 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,064,182
Number of Sequences: 37544
Number of extensions: 408322
Number of successful extensions: 1025
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)