Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1129
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    28   1.5  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    27   2.6  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    26   4.5  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    26   6.0  
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...    25   7.9  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.9  
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...    25   7.9  

>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 409 LCLNASKAEASLAESGKDMLTVEPRESGGSKQWV 510
           LCL  S     +  SG D  T++    GG ++WV
Sbjct: 250 LCLGVSANGDMVFSSGIDRKTIQYSREGGKREWV 283


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/29 (41%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = -3

Query: 217 LANFVRNDRKSRH-RRIKKQRRYERLAAT 134
           LANF+R DR+S H    +K++ Y ++A++
Sbjct: 696 LANFIRYDRESVHIPEFQKRKSYSQVASS 724


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 134 CGSQAFIATLLFDPSMSALPIIANKIRQAL 223
           CGS   I  +LF  S S L   + KI Q L
Sbjct: 511 CGSSPAIKLILFSKSFSVLQSTSEKIEQLL 540


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +1

Query: 391 ELPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQWVRRRVSGYR-ARIRNHG 555
           E  +A     A +AEA   E+ K+++  EP+++  +K+      + +R +R+R +G
Sbjct: 93  EAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKKIAIIDSTNFRDSRVRVNG 148


>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 440 LASALEAFRHNPADGSSHHRPLGRVHEPNVR 348
           LA   +A R+NP+ G+ H R   R+ +  VR
Sbjct: 56  LAYLRKACRYNPSRGAFHFRAPSRIFQKAVR 86


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/64 (26%), Positives = 24/64 (37%)
 Frame = -2

Query: 485 SRGSTVSISLPDSARLASALEAFRHNPADGSSHHRPLGRVHEPNVRNCGSSRTEQYYYRN 306
           S  STVS S   S+   ++  +    PA  SSH   L      +     S+     +Y N
Sbjct: 367 SFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHN 426

Query: 305 DKPS 294
              S
Sbjct: 427 STSS 430


>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 440 LASALEAFRHNPADGSSHHRPLGRVHEPNVR 348
           LA   +A R+NP+ G+ H R   R+ +  VR
Sbjct: 56  LAYLRKACRYNPSRGAFHFRAPSRIFQKAVR 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,941,606
Number of Sequences: 5004
Number of extensions: 60911
Number of successful extensions: 154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)