Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1129
         (699 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-2411|AAF49717.2| 1333|Drosophila melanogaster CG17177-P...    30   3.5  
AY052096-1|AAK93520.1|  574|Drosophila melanogaster SD04526p pro...    29   8.0  
AE014296-3703|AAN12199.1|  574|Drosophila melanogaster CG32452-P...    29   8.0  
AE014296-3702|AAN12198.1|  574|Drosophila melanogaster CG32452-P...    29   8.0  

>AE014296-2411|AAF49717.2| 1333|Drosophila melanogaster CG17177-PA
           protein.
          Length = 1333

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = -3

Query: 379 RSAECMNQMSETAVPLVLSSITIATTSHQ*G 287
           +  EC  Q+S  ++ LV+S+IT+AT +H  G
Sbjct: 701 QQCECHAQVSIASLLLVISAITVATNTHDYG 731


>AY052096-1|AAK93520.1|  574|Drosophila melanogaster SD04526p
           protein.
          Length = 574

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 22/71 (30%), Positives = 29/71 (40%)
 Frame = -2

Query: 539 RARYPETRRRTHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPADGSSHHRPLGRVHE 360
           R+R P  R+       PD R  +   SL   +R AS     RH      S  R LG  + 
Sbjct: 269 RSRLPSRRKLISRSRSPDHRSRSRYRSLGKGSRHASPCAGNRHRSLRSPSVERRLGSRNS 328

Query: 359 PNVRNCGSSRT 327
           P  R+   SR+
Sbjct: 329 PVRRSRYRSRS 339


>AE014296-3703|AAN12199.1|  574|Drosophila melanogaster CG32452-PB,
           isoform B protein.
          Length = 574

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 22/71 (30%), Positives = 29/71 (40%)
 Frame = -2

Query: 539 RARYPETRRRTHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPADGSSHHRPLGRVHE 360
           R+R P  R+       PD R  +   SL   +R AS     RH      S  R LG  + 
Sbjct: 269 RSRLPSRRKLISRSRSPDHRSRSRYRSLGKGSRHASPCAGNRHRSLRSPSVERRLGSRNS 328

Query: 359 PNVRNCGSSRT 327
           P  R+   SR+
Sbjct: 329 PVRRSRYRSRS 339


>AE014296-3702|AAN12198.1|  574|Drosophila melanogaster CG32452-PA,
           isoform A protein.
          Length = 574

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 22/71 (30%), Positives = 29/71 (40%)
 Frame = -2

Query: 539 RARYPETRRRTHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPADGSSHHRPLGRVHE 360
           R+R P  R+       PD R  +   SL   +R AS     RH      S  R LG  + 
Sbjct: 269 RSRLPSRRKLISRSRSPDHRSRSRYRSLGKGSRHASPCAGNRHRSLRSPSVERRLGSRNS 328

Query: 359 PNVRNCGSSRT 327
           P  R+   SR+
Sbjct: 329 PVRRSRYRSRS 339


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,735,570
Number of Sequences: 53049
Number of extensions: 721943
Number of successful extensions: 1766
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1765
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)