Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1129
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69794-1|CAA93679.2|  663|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AC024753-1|AAF60456.1|  732|Caenorhabditis elegans Hypothetical ...    28   5.6  
Z36282-2|CAA85288.3|  240|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical ...    28   7.4  

>Z69794-1|CAA93679.2|  663|Caenorhabditis elegans Hypothetical
           protein R03G8.1 protein.
          Length = 663

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +2

Query: 437 PA*PNPARICSLWSPESREALNNGFDVASRGTELEFV 547
           P  P+  +   LW+     A  NGFD    G++ +F+
Sbjct: 362 PNSPDQRKFAFLWTTRLGHATENGFDATENGSDNDFL 398


>AC024753-1|AAF60456.1|  732|Caenorhabditis elegans Hypothetical
           protein Y23H5B.6 protein.
          Length = 732

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 482 ESREALNNGFDVASRGTELEFVIMVIAVSC 571
           ES+ A+    DVASRG + E +  VI V C
Sbjct: 370 ESKAAVLIATDVASRGLDFEHIDWVIQVDC 399


>Z36282-2|CAA85288.3|  240|Caenorhabditis elegans Hypothetical
           protein K10G9.2 protein.
          Length = 240

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
 Frame = -2

Query: 545 RIRARYPETRRRTHCLEPPDSRGSTVSISLPDSA-----RLASALEAFRHNPADGSSH 387
           R+ +     R+R++ L   + +G ++S+SLP SA     R  +  +AFR++ A   SH
Sbjct: 116 RVYSNLHSKRKRSNSLTNYN-KGQSLSVSLPPSARHTPHRFVNEEDAFRNSMASSDSH 172


>AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical
            protein Y43D4A.5 protein.
          Length = 1648

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -2

Query: 494  PPDSRGSTVSISLPDSARLASALEAFRHNPAD-GSSHHRPLGRVHEPNVRNCGSSR 330
            PP S  S V+ + P   +    +E+  H PAD GS    PLG    P  R  G+ +
Sbjct: 868  PPGSASSMVAHTAPGPLKSHRNVES-GHAPADFGSGSVEPLGSPPGPQTRPIGTGQ 922


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,403,348
Number of Sequences: 27780
Number of extensions: 349584
Number of successful extensions: 831
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)