Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1129
         (699 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g14740.1 68414.m01762 expressed protein                             31   0.97 
At1g67560.1 68414.m07697 lipoxygenase family protein similar to ...    30   1.7  
At4g16845.1 68417.m02543 vernalization 2 protein (VRN2) identica...    29   2.2  
At3g49730.1 68416.m05437 pentatricopeptide (PPR) repeat-containi...    29   3.0  
At3g44730.1 68416.m04814 kinesin motor protein-related similar t...    28   6.8  
At5g28290.1 68418.m03434 protein kinase, putative similar to LST...    27   9.0  

>At1g14740.1 68414.m01762 expressed protein
          Length = 733

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +1

Query: 319 YCSVREEPQFRTFGSCTRP-SGRWCELPSAGLCLNASKAEASLAESGKDMLTVEPRESGG 495
           + +VR       F S + P SG   EL  + LC N+ K   SL + GK+++T     S  
Sbjct: 46  FLNVRSNNLDGGFSSKSSPRSGN--ELTLSYLCENSGKLAESLGQKGKEVVTFSENSSYD 103

Query: 496 SKQWVRR 516
            K WV R
Sbjct: 104 DK-WVER 109


>At1g67560.1 68414.m07697 lipoxygenase family protein similar to
           13-lipoxygenase GB:CAA65269 [Solanum tuberosum],
           gi:1654140 [Lycopersicon esculentum]
          Length = 917

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = -3

Query: 559 YDHDYEFELGTPRRDVEPIV*SLPTLGAPQ*AYPCRIRLG 440
           YD+D   +LG PR+  E +    P LG P+  YP R R G
Sbjct: 255 YDYDVYNDLGDPRK-TERV---RPVLGVPETPYPRRCRTG 290


>At4g16845.1 68417.m02543 vernalization 2 protein (VRN2) identical
           to vernalization 2 protein [Arabidopsis thaliana]
           gi|16945788|gb|AAL32135
          Length = 440

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -3

Query: 607 MLCGIVSG*QFHTGNSYD-HDYEFEL 533
           MLCG   G QFH  +S+D  ++EF+L
Sbjct: 95  MLCGSFKGLQFHLNSSHDLFEFEFKL 120


>At3g49730.1 68416.m05437 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1184

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = +1

Query: 427 KAEASLAESGKDMLTVEPRESGGSKQWVRRRVSGYRARIRNHGHSCFLCEIVIRSQ 594
           K E  L E  K     E ++ G   Q  + RVS  R R+R+   S FL    +RS+
Sbjct: 599 KGEEDLIEKAKPKGNKEGKKKGTDHQRYKGRVSLARNRLRSETPSSFLARDRLRSK 654


>At3g44730.1 68416.m04814 kinesin motor protein-related similar to 4
           other kinesin-like proteins of A. thaliana: F02P16.12
           (PID:g2191180), katA (D11371), katB (D21137), and katC
           (D21138); contains non-consensus AT-AC splice sites at
           intron 10
          Length = 1087

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = -2

Query: 359 PNVRNCGSSRTEQYYYRNDKPSVG*N*PVSRRSKPAHVP 243
           P+ R+  + R      RN KP V  N PVSR   PA VP
Sbjct: 829 PSRRSLSTDRASTIKSRN-KPDVTQNLPVSRTPFPARVP 866


>At5g28290.1 68418.m03434 protein kinase, putative similar to
           LSTK-1-like kinase [Lycopersicon esculentum]
           GI:15637110; contains Pfam profile: PF00069 Eukaryotic
           protein kinase domain
          Length = 568

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
 Frame = -2

Query: 539 RARYPETRRRTHCLEPPDSRGSTVSISLPDSARLASALEAF--RHNPADGSSHHRPLGRV 366
           R+ YP+ R+RT   +      S   +   DS      +  +  RH P D S++      V
Sbjct: 284 RSSYPQQRKRTSG-KSVSFGPSRFGVDQEDSVSSVKPVHTYLHRHRPVDLSANDTSRVVV 342

Query: 365 HEPNVRNCGSSRTEQYYYRNDKPSVG 288
             P V +  S+ ++    R+++P  G
Sbjct: 343 RRPAVSSVVSNSSKYVPVRSNQPKSG 368


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,655,508
Number of Sequences: 28952
Number of extensions: 333338
Number of successful extensions: 703
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)