Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1128
(677 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0098 + 25560158-25560925 33 0.21
09_03_0172 - 13072575-13073800,13075919-13076054 31 0.64
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 31 0.85
06_01_0350 + 2534422-2535615 31 1.1
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921... 30 1.5
12_02_0407 - 18654134-18654172,18654913-18655803 29 2.6
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 29 2.6
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 29 4.5
04_03_0732 + 19095320-19095827,19095848-19096621,19096863-190969... 29 4.5
01_07_0257 - 42343493-42343528,42344215-42344271,42344272-423443... 29 4.5
11_05_0087 + 18970741-18972702 28 6.0
12_02_0854 + 23697826-23698033,23699111-23699276,23699430-236994... 28 7.9
10_08_0919 + 21564245-21565699,21566876-21567022,21567170-215672... 28 7.9
05_04_0162 + 18645459-18645827,18645934-18646149,18646224-186462... 28 7.9
04_03_0211 - 12694217-12694318,12695119-12695256,12695470-12695628 28 7.9
03_05_0565 + 25667391-25667696 28 7.9
>05_06_0098 + 25560158-25560925
Length = 255
Score = 33.1 bits (72), Expect = 0.21
Identities = 17/65 (26%), Positives = 27/65 (41%)
Frame = -1
Query: 443 HRPHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRIWVRTGATSP 264
HRP P P + P L +P + V I P PT F + + ++++ + T P
Sbjct: 31 HRPPPPPPSSSSQPALPPSPRTVVPRTIDTTPFPTTFVQADTASFKQVVQMLTGSDTTPP 90
Query: 263 RTSSP 249
P
Sbjct: 91 SQRPP 95
>09_03_0172 - 13072575-13073800,13075919-13076054
Length = 453
Score = 31.5 bits (68), Expect = 0.64
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 464 CVIFGLAS*YFNIMRLKNCIYLI*HSRKSSYVSDWIR-TRVL-RPSADLPSRKSCRFV 631
C+ FG + ++ +NCIY + + K YV D R T V+ P ADLP + + V
Sbjct: 392 CIGFGSSLTAEDVGLKRNCIYFVRPNDKGLYVYDMERGTTVMHNPGADLPDNMTLQIV 449
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 31.1 bits (67), Expect = 0.85
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Frame = -1
Query: 464 TNIDQTRH------RPHPLPVQTRHAPVLRANP 384
T IDQ H + H +PVQ H+PVL+ NP
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNP 356
>06_01_0350 + 2534422-2535615
Length = 397
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -3
Query: 159 PWNSNAQAEKKTLPGPLGGVFRP 91
PW S+A+ E+K LP PL +F P
Sbjct: 42 PWRSSARLERKLLPPPLPWLFLP 64
>02_02_0346 -
9214365-9214583,9214830-9214919,9215012-9215177,
9215601-9215911,9215944-9216566,9216779-9216968,
9217096-9217197,9217285-9217425,9217815-9218411,
9219126-9219286,9220709-9220824,9221538-9221654,
9221746-9221808,9221879-9221949
Length = 988
Score = 30.3 bits (65), Expect = 1.5
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = -1
Query: 257 SSPEFSRSA--ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFG 84
S E SR++ + I+ P M S + + GFHG L+ KL PDL + HF
Sbjct: 175 SKQESSRASPMKLIKLYPHM--SGEQKRLIEGAGFHGLVDLKCS-KLRPDLCSWLMEHFN 231
Query: 83 LPRRTLVFKAEGTI 42
LVF G I
Sbjct: 232 PATNQLVFPGRGAI 245
>12_02_0407 - 18654134-18654172,18654913-18655803
Length = 309
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +1
Query: 16 EPGSGTVSIIVPSALKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPWNPIEGRY 180
E G+G ++++ PS +T P+ P R + CLS ++PI GRY
Sbjct: 115 EEGTGRLTLVNPSTGETLAVPPPPRLPPKRRHRRAPLVVSCLS--FGYHPITGRY 167
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 434 HPLPVQTRHAPVLRANPYSEVTDPICRLPL 345
H L + RH P L+A P S + C+LPL
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLPL 136
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -1
Query: 428 LPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 315
+P Q + A + A+P + V C LP P+LF L L
Sbjct: 292 IPYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329
>04_03_0732 +
19095320-19095827,19095848-19096621,19096863-19096906,
19097191-19097250
Length = 461
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 440 RPHPLPVQTRHAPVLRANPYSEVTDP 363
RP+PL V +RHA VL + V DP
Sbjct: 133 RPNPLDVVSRHAGVLSRGDHCLVVDP 158
>01_07_0257 -
42343493-42343528,42344215-42344271,42344272-42344316,
42344374-42344518,42344606-42344733,42344939-42345044,
42345113-42345189,42345264-42345361,42345945-42346058,
42346154-42346294,42346418-42346502,42346721-42346849
Length = 386
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 304 TCCGYGYEPARHLHVHPHLNFQGP 233
+CCG+ R+ + PHLN GP
Sbjct: 135 SCCGFEEVLERYRQIVPHLNLSGP 158
>11_05_0087 + 18970741-18972702
Length = 653
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 145 VRVPWNPIEGRYGSEREEHRICGGVRILSADLENSGEDVR 264
VR P P+ GR+G RE R + + + G+ VR
Sbjct: 56 VRAPRRPLHGRHGHHREHRRGADELEPAGSPRHHRGQSVR 95
>12_02_0854 +
23697826-23698033,23699111-23699276,23699430-23699466,
23699531-23700145
Length = 341
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = -2
Query: 466 ARTSTRPGTGRIRFPSKPDTPRSSE 392
A TST PG GR R PS P TP S+
Sbjct: 16 AATSTDPGRGRKRPPS-PSTPTPSD 39
>10_08_0919 +
21564245-21565699,21566876-21567022,21567170-21567286,
21567580-21568176
Length = 771
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -1
Query: 122 FPDLSAASSGHFGLPRRTLVFKAEGTIIETVPLPGSG 12
F L+ + +GLP +L A T++E P PG G
Sbjct: 287 FSPLAVQTCRAYGLPLLSLQSHANATLVEQPPAPGLG 323
>05_04_0162 +
18645459-18645827,18645934-18646149,18646224-18646278,
18646545-18646672,18647134-18647217,18648742-18648867,
18648949-18649086
Length = 371
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -2
Query: 454 TRPGTGRIRFPSKPDTPRSSEPILIPKLR 368
TRP TG+ P K D RS + I KLR
Sbjct: 108 TRPRTGKAALPLKRDRTRSKRFLEIQKLR 136
>04_03_0211 - 12694217-12694318,12695119-12695256,12695470-12695628
Length = 132
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = -1
Query: 320 ALHLGDLLRIWVRTGATSPRTSSPEFSRSAESIRTPPQMRCSSRSEP 180
A H G I VRT + TS A SI TP + CS+ + P
Sbjct: 38 ARHTGPRSHIAVRTCHVNDETSRSTCRNGATSIATPSVVACSALALP 84
>03_05_0565 + 25667391-25667696
Length = 101
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -1
Query: 296 RIWVRTGATSPRTSSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGT 150
RI++ A PR SP +R A++ S+ +EP P HGT
Sbjct: 40 RIFMADAAHPPRHRSPPLARRADAASPRRSCSGSASAEPQAPVEEPHGT 88
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,642,514
Number of Sequences: 37544
Number of extensions: 478153
Number of successful extensions: 1767
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1766
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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