Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1126
(747 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g24740.1 68416.m03106 expressed protein 29 2.5
At1g51160.1 68414.m05752 synbindin, putative similar to Swiss-Pr... 29 4.3
At4g08880.1 68417.m01464 Ulp1 protease family protein contains P... 28 5.7
At3g25910.1 68416.m03230 expressed protein 28 7.6
At1g04300.1 68414.m00421 meprin and TRAF homology domain-contain... 28 7.6
At5g37020.1 68418.m04440 auxin-responsive factor (ARF8) identica... 27 10.0
At4g31410.2 68417.m04457 expressed protein 27 10.0
At4g31410.1 68417.m04456 expressed protein 27 10.0
At2g18540.1 68415.m02160 cupin family protein contains Pfam prof... 27 10.0
At1g05950.1 68414.m00624 expressed protein 27 10.0
>At3g24740.1 68416.m03106 expressed protein
Length = 354
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = -1
Query: 270 HSQATHSKERPSRRDPPSLRAWHPL---RENGPV 178
H++ TH RPS DP RAW L RE G +
Sbjct: 184 HARRTHPTTRPSDTDPSRERAWRRLENQREYGDI 217
>At1g51160.1 68414.m05752 synbindin, putative similar to
Swiss-Prot:Q9ES56 synbindin (TRS23 homolog) [Mus
musculus]
Length = 169
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 615 GRPYEFYSFRTRSDRVSFRSTHSDGIIKLITH 710
G+ F+SFRT + ++SF T S I L+TH
Sbjct: 88 GQGCSFHSFRTNTYKLSFMETPSGIKIILVTH 119
>At4g08880.1 68417.m01464 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At1g34730, At1g27790, At1g34740, At1g27780,
At5g36850, At3g42730, At1g52020, At3g24390, At4g05280,
At1g25886, At4g03300
Length = 1463
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -3
Query: 235 SPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPVID 104
S P + AP TGK+P R + G TRK + S +D
Sbjct: 376 SREPPTSMDKAPVTGKKPSRRMSTKGSTGTRKSSRLTRVSHDVD 419
>At3g25910.1 68416.m03230 expressed protein
Length = 372
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -1
Query: 270 HSQATHSKERPSRRDPPSLRAWHPLRENGPVQDEL 166
H++ H RPS DP R+W L + D L
Sbjct: 220 HARLLHPGVRPSEADPERQRSWRRLERQSDLGDLL 254
>At1g04300.1 68414.m00421 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471;contains Pfam PF00917: Meprin And
TRAF-Homology (MATH) domain
Length = 1052
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Frame = -1
Query: 594 RRTGRDALLREKCTSSRDVKRSRTVPTEKNARNERSVNI*THV-----NVRPRENDE 439
+R R A REK + + K+ R K+ R E V+ TH N +NDE
Sbjct: 412 QRAKRGAAEREKKSKKKQAKQKRNKNKGKDKRKEEKVSFATHAKDLEENQNQNQNDE 468
>At5g37020.1 68418.m04440 auxin-responsive factor (ARF8) identical
to auxin response factor 8 GI:4104931 from [Arabidopsis
thaliana]
Length = 811
Score = 27.5 bits (58), Expect = 10.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 114 PLSIKTTGFSAGLYSCSLAATKEIL 40
P+S+ +GF LYSC T E+L
Sbjct: 668 PMSLTDSGFQNSLYSCMQDTTHELL 692
>At4g31410.2 68417.m04457 expressed protein
Length = 308
Score = 27.5 bits (58), Expect = 10.0
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -1
Query: 270 HSQATHSKERPSRRDPPSLRAWHPLRENGPVQDEL 166
H+Q+ H RPS DP W +++ + D L
Sbjct: 146 HAQSEHPDSRPSEIDPARKLDWENFQQSSEIIDVL 180
>At4g31410.1 68417.m04456 expressed protein
Length = 308
Score = 27.5 bits (58), Expect = 10.0
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -1
Query: 270 HSQATHSKERPSRRDPPSLRAWHPLRENGPVQDEL 166
H+Q+ H RPS DP W +++ + D L
Sbjct: 146 HAQSEHPDSRPSEIDPARKLDWENFQQSSEIIDVL 180
>At2g18540.1 68415.m02160 cupin family protein contains Pfam profile
PF00190: Cupin
Length = 707
Score = 27.5 bits (58), Expect = 10.0
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -3
Query: 511 EERTKRTFRQHLNARKRTPERKR 443
EE T+R R+ ARKR ERKR
Sbjct: 472 EEETERKKREEEEARKREEERKR 494
>At1g05950.1 68414.m00624 expressed protein
Length = 590
Score = 27.5 bits (58), Expect = 10.0
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -1
Query: 597 PRRTGRDALLREKCTSSRDVKRSRTVPTEKN 505
PRR +++L + C S++ +K S T+P+ K+
Sbjct: 485 PRRNLQESLDKSACQSNKRLKLSETLPSTKS 515
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,144,000
Number of Sequences: 28952
Number of extensions: 311419
Number of successful extensions: 826
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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